Equivalence class NR_3.0_03510.45 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | 18S rRNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 2 | 5TBW|1|sR | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2017-07-26 |
| 3 | 4V88|1|A2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 4 | 5TBW|1|A | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2017-07-26 |
| 5 | 7OSA|1|18S | 18S rRNA | Saccharomyces cerevisiae | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 2021-12-08 |
| 6 | 7OSM|1|18S | 18S rRNA | Saccharomyces cerevisiae | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 2021-12-08 |
| 7 | 7PZY|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of the vacant Candida albicans 80S ribosome | ELECTRON MICROSCOPY | 2.32 | 2022-05-18 |
| 8 | 6T4Q|1|C2 | 18S rRNA | Saccharomyces cerevisiae | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 2019-12-25 |
| 9 | 7Q08|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of Candida albicans 80S ribosome in complex with cycloheximide | ELECTRON MICROSCOPY | 2.56 | 2022-05-25 |
| 10 | 7MPJ|1|B5 | 18S rRNA | Saccharomyces cerevisiae | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 2022-05-11 |
| 11 | 7Q0F|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of Candida albicans 80S ribosome in complex with phyllanthoside | ELECTRON MICROSCOPY | 2.64 | 2022-05-18 |
| 12 | 7Q0R|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of the Candida albicans 80S ribosome in complex with blasticidin s | ELECTRON MICROSCOPY | 2.67 | 2022-05-25 |
| 13 | 4U4R|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 14 | 6WOO|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 2020-09-23 |
| 15 | 6TB3|1|2 | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 2020-04-22 |
| 16 | 6SNT|1|2 | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 2020-03-04 |
| 17 | 7Q0P|1|A | 18S ribosomal RNA | Candida albicans SC5314 | Structure of the Candida albicans 80S ribosome in complex with anisomycin | ELECTRON MICROSCOPY | 2.77 | 2022-05-18 |
| 18 | 4U3U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 19 | 4U4R|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 20 | 7A1G|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | ELECTRON MICROSCOPY | 3 | 2020-10-14 |
| 21 | 6ZVI|1|h | 18S rRNA | Saccharomyces cerevisiae | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 2020-09-09 |
| 22 | 4U3U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 23 | 4U3M|1|6 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 24 | 4U4Q|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 25 | 4U4U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 26 | 4U52|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 27 | 4U3M|1|2 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 28 | 4U52|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 29 | 4U4U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 30 | 4U4Q|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_03510.45 | NR_3.0_03510.44 | 3.232 | (28) 4U3U|1|6, 6WOO|1|2, 4U3U|1|2, 6TB3|1|2, 4U3M|1|6, 6T4Q|1|C2, 4U3M|1|2, 6SNT|1|2, 5TBW|1|sR, 5TBW|1|A, 4V88|1|A6, 4V88|1|A2, 7Q0P|1|A, 4U52|1|6, 7Q0F|1|A, 4U52|1|2, 4U4U|1|6, 7PZY|1|A, 4U4U|1|2, 7OSM|1|18S, 4U4R|1|6, 7OSA|1|18S, 4U4R|1|2, 7MPJ|1|B5, 4U4Q|1|6, 7A1G|1|2, 4U4Q|1|2, 6ZVI|1|h | (2) 7Q08|1|A, 7Q0R|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_03510.45 | NR_3.0_03510.46 | 3.238 | (30) 4U3M|1|2, 6SNT|1|2, 6T4Q|1|C2, 6TB3|1|2, 6WOO|1|2, 6ZVI|1|h, 7A1G|1|2, 7MPJ|1|B5, 7OSA|1|18S, 7OSM|1|18S, 7PZY|1|A, 7Q08|1|A, 7Q0F|1|A, 7Q0P|1|A, 5TBW|1|sR, 5TBW|1|A, 4U3M|1|6, 4U3U|1|2, 4U3U|1|6, 4U4Q|1|2, 4U4Q|1|6, 4U4R|1|2, 4U4R|1|6, 4U4U|1|2, 4U4U|1|6, 4U52|1|2, 4U52|1|6, 4V88|1|A2, 4V88|1|A6, 7Q0R|1|A | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5TBW|1|sR | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1783 |
| 2 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 3 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 |
| 4 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 |
| 5 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1770 |
| 6 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 7 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 8 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 9 | 7Q0R|1|A | Structure of the Candida albicans 80S ribosome in complex with blasticidin s | ELECTRON MICROSCOPY | 2.67 | 1692 |
| 10 | 7Q0P|1|A | Structure of the Candida albicans 80S ribosome in complex with anisomycin | ELECTRON MICROSCOPY | 2.77 | 1692 |
| 11 | 7PZY|1|A | Structure of the vacant Candida albicans 80S ribosome | ELECTRON MICROSCOPY | 2.32 | 1692 |
| 12 | 7Q0F|1|A | Structure of Candida albicans 80S ribosome in complex with phyllanthoside | ELECTRON MICROSCOPY | 2.64 | 1692 |
| 13 | 7Q08|1|A | Structure of Candida albicans 80S ribosome in complex with cycloheximide | ELECTRON MICROSCOPY | 2.56 | 1692 |
| 14 | 7OSM|1|18S | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1732 |
| 15 | 7A1G|1|2 | Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complex | ELECTRON MICROSCOPY | 3 | 1771 |
| 16 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 |
| 17 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 |
| 18 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 19 | 5TBW|1|A | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1781 |
| 20 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1768 |
| 21 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 22 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 23 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 24 | 7MPJ|1|B5 | Stm1 bound vacant 80S structure isolated from nop1-D243A | ELECTRON MICROSCOPY | 2.7 | 1744 |
| 25 | 7OSA|1|18S | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-RAY DIFFRACTION | 3 | 1717 |
| 26 | 6T4Q|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 1771 |
| 27 | 6SNT|1|2 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 1771 |
| 28 | 6TB3|1|2 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 1771 |
| 29 | 6WOO|1|2 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | ELECTRON MICROSCOPY | 2.9 | 1780 |
| 30 | 6ZVI|1|h | Mbf1-ribosome complex | ELECTRON MICROSCOPY | 3 | 1758 |