Equivalence class NR_3.0_12260.2 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3UCZ|1|R (rep) | Cyclic di-GMP-I riboswitch | RNA (92-MER), RNA (5'-R(*GP*G)-3') | RF01051 | The c-di-GMP-I riboswitch bound to GpG | X-ray diffraction | 2.8 | 2012-01-04 | ||
2 | 3UCU|1|R | Cyclic di-GMP-I riboswitch | RNA (92-MER), diguanosine monophosphate | RF01051 | The c-di-GMP-I riboswitch bound to pGpG | X-ray diffraction | 2.8 | 2012-01-04 | ||
3 | 3MXH|1|R | Cyclic di-GMP-I riboswitch | c-di-GMP riboswitch | RF01051 | Native structure of a c-di-GMP riboswitch from V. cholerae | X-ray diffraction | 2.3 | 2010-08-25 | ||
4 | 3MUR|1|R | Cyclic di-GMP-I riboswitch | C92U mutant c-di-GMP riboswitch | RF01051 | Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-ray diffraction | 3 | 2010-08-25 | ||
5 | 4YB1|1|R | Cyclic di-GMP-I riboswitch | RNA (91-MER) | Vibrio cholerae | Bacteria | RF01051 | 20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP | X-ray diffraction | 2.08 | 2015-04-15 |
6 | 3UD4|1|R | Cyclic di-GMP-I riboswitch | RNA (92-MER), RNA (5'-R(*GP*A)-3') | RF01051 | The C92U mutant c-di-GMP-I riboswitch bound to GpA | X-ray diffraction | 2.7 | 2012-01-04 | ||
7 | 3MUM|1|R | Cyclic di-GMP-I riboswitch | G20A mutant c-di-GMP Riboswitch | RF01051 | Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP | X-ray diffraction | 2.9 | 2010-08-25 | ||
8 | 3IRW|1|R | Cyclic di-GMP-I riboswitch | c-di-GMP Riboswitch | Vibrio cholerae | Bacteria | RF01051 | Structure of a c-di-GMP riboswitch from V. cholerae | X-ray diffraction | 2.7 | 2009-11-10 |
9 | 3MUT|1|R | Cyclic di-GMP-I riboswitch | G20A/C92U mutant c-di-GMP riboswitch | RF01051 | Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-ray diffraction | 3 | 2010-08-25 |
Release history
Release | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
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Date | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 3MXH|1|R | Native structure of a c-di-GMP riboswitch from V. cholerae | X-RAY DIFFRACTION | 2.3 | 91 |
2 | 3MUM|1|R | Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP | X-RAY DIFFRACTION | 2.9 | 91 |
3 | 3MUT|1|R | Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-RAY DIFFRACTION | 3 | 91 |
4 | 3MUR|1|R | Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP | X-RAY DIFFRACTION | 3 | 91 |
5 | 3UCZ|1|R | The c-di-GMP-I riboswitch bound to GpG | X-RAY DIFFRACTION | 2.8 | 91 |
6 | 3UCU|1|R | The c-di-GMP-I riboswitch bound to pGpG | X-RAY DIFFRACTION | 2.8 | 91 |
7 | 3UD4|1|R | The C92U mutant c-di-GMP-I riboswitch bound to GpA | X-RAY DIFFRACTION | 2.7 | 91 |
8 | 3IRW|1|R | Structure of a c-di-GMP riboswitch from V. cholerae | X-RAY DIFFRACTION | 2.7 | 90 |
9 | 4YB1|1|R | 20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP | X-RAY DIFFRACTION | 2.08 | 91 |