BGSU RNA Site //

Equivalence class NR_3.0_12260.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
13UCZ|1|R (rep)Cyclic di-GMP-I riboswitchRNA (92-MER), RNA (5'-R(*GP*G)-3')RF01051The c-di-GMP-I riboswitch bound to GpGX-ray diffraction2.82012-01-04
23UCU|1|RCyclic di-GMP-I riboswitchRNA (92-MER), diguanosine monophosphateRF01051The c-di-GMP-I riboswitch bound to pGpGX-ray diffraction2.82012-01-04
33MXH|1|RCyclic di-GMP-I riboswitchc-di-GMP riboswitchRF01051Native structure of a c-di-GMP riboswitch from V. choleraeX-ray diffraction2.32010-08-25
43MUR|1|RCyclic di-GMP-I riboswitchC92U mutant c-di-GMP riboswitchRF01051Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction32010-08-25
54YB1|1|RCyclic di-GMP-I riboswitchRNA (91-MER)Vibrio choleraeBacteriaRF0105120A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMPX-ray diffraction2.082015-04-15
63UD4|1|RCyclic di-GMP-I riboswitchRNA (92-MER), RNA (5'-R(*GP*A)-3')RF01051The C92U mutant c-di-GMP-I riboswitch bound to GpAX-ray diffraction2.72012-01-04
73MUM|1|RCyclic di-GMP-I riboswitchG20A mutant c-di-GMP RiboswitchRF01051Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction2.92010-08-25
83IRW|1|RCyclic di-GMP-I riboswitchc-di-GMP RiboswitchVibrio choleraeBacteriaRF01051Structure of a c-di-GMP riboswitch from V. choleraeX-ray diffraction2.72009-11-10
93MUT|1|RCyclic di-GMP-I riboswitchG20A/C92U mutant c-di-GMP riboswitchRF01051Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-ray diffraction32010-08-25

Release history

Release2.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_12260.2NR_all_12260.12.19(8) 3IRW|1|R, 3MUR|1|R, 3MXH|1|R, 3UCZ|1|R, 3MUM|1|R, 3MUT|1|R, 3UCU|1|R, 3UD4|1|R(1) 4YB1|1|R(4) 3IWN|1|A, 3IWN|1|B, 3MUV|1|R, 3UD3|1|R

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_12260.2NR_3.0_12260.32.93(9) 3IRW|1|R, 3MUM|1|R, 3MUR|1|R, 3MUT|1|R, 3MXH|1|R, 3UCU|1|R, 3UCZ|1|R, 3UD4|1|R, 4YB1|1|R(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13MXH|1|RNative structure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.391
23MUM|1|RCrystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION2.991
33MUT|1|RCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
43MUR|1|RCrystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
53UCZ|1|RThe c-di-GMP-I riboswitch bound to GpGX-RAY DIFFRACTION2.891
63UCU|1|RThe c-di-GMP-I riboswitch bound to pGpGX-RAY DIFFRACTION2.891
73UD4|1|RThe C92U mutant c-di-GMP-I riboswitch bound to GpAX-RAY DIFFRACTION2.791
83IRW|1|RStructure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.790
94YB1|1|R20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMPX-RAY DIFFRACTION2.0891