NR_3.0_12260.2

Members (9)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	3UCZ\|1\|R (rep)	Cyclic di-GMP-I riboswitch	RNA (92-MER), RNA (5'-R(GPG)-3')			RF01051	The c-di-GMP-I riboswitch bound to GpG	X-ray diffraction	2.8	2012-01-04
2	3UCU\|1\|R	Cyclic di-GMP-I riboswitch	RNA (92-MER), diguanosine monophosphate			RF01051	The c-di-GMP-I riboswitch bound to pGpG	X-ray diffraction	2.8	2012-01-04
3	3MXH\|1\|R	Cyclic di-GMP-I riboswitch	c-di-GMP riboswitch			RF01051	Native structure of a c-di-GMP riboswitch from V. cholerae	X-ray diffraction	2.3	2010-08-25
4	3MUR\|1\|R	Cyclic di-GMP-I riboswitch	C92U mutant c-di-GMP riboswitch			RF01051	Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP	X-ray diffraction	3	2010-08-25
5	4YB1\|1\|R	Cyclic di-GMP-I riboswitch	RNA (91-MER)	Vibrio cholerae	Bacteria	RF01051	20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP	X-ray diffraction	2.08	2015-04-15
6	3UD4\|1\|R	Cyclic di-GMP-I riboswitch	RNA (92-MER), RNA (5'-R(GPA)-3')			RF01051	The C92U mutant c-di-GMP-I riboswitch bound to GpA	X-ray diffraction	2.7	2012-01-04
7	3MUM\|1\|R	Cyclic di-GMP-I riboswitch	G20A mutant c-di-GMP Riboswitch			RF01051	Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP	X-ray diffraction	2.9	2010-08-25
8	3IRW\|1\|R	Cyclic di-GMP-I riboswitch	c-di-GMP Riboswitch	Vibrio cholerae	Bacteria	RF01051	Structure of a c-di-GMP riboswitch from V. cholerae	X-ray diffraction	2.7	2009-11-10
9	3MUT\|1\|R	Cyclic di-GMP-I riboswitch	G20A/C92U mutant c-di-GMP riboswitch			RF01051	Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP	X-ray diffraction	3	2010-08-25

Release history

Release	2.19	2.20	2.21	2.22	2.23	2.24	2.25	2.26	2.27	2.28	2.29	2.30	2.31	2.32	2.33	2.34	2.35	2.36	2.37	2.38	2.39	2.40	2.41	2.42	2.43	2.44	2.45	2.46	2.47	2.48	2.49	2.50	2.51	2.52	2.53	2.54	2.55	2.56	2.57	2.58	2.59	2.60	2.61	2.62	2.63	2.64	2.65	2.66	2.67	2.68	2.69	2.70	2.71	2.72	2.73	2.74	2.75	2.76	2.77	2.78	2.79	2.80	2.81	2.82	2.83	2.84	2.85	2.86	2.87	2.88	2.89	2.90	2.91	2.92
Date	2015-04-17	2015-04-24	2015-05-01	2015-05-08	2015-05-15	2015-05-22	2015-05-29	2015-06-05	2015-06-12	2015-06-19	2015-06-26	2015-07-03	2015-07-10	2015-07-17	2015-07-24	2015-07-31	2015-08-07	2015-08-14	2015-08-21	2015-08-28	2015-09-04	2015-09-11	2015-09-18	2015-09-25	2015-10-02	2015-10-09	2015-10-16	2015-10-23	2015-10-30	2015-11-06	2015-11-13	2015-11-20	2015-11-27	2015-12-04	2015-12-11	2015-12-18	2015-12-25	2016-01-01	2016-01-08	2016-01-15	2016-01-22	2016-01-29	2016-02-05	2016-02-12	2016-02-19	2016-02-26	2016-03-04	2016-03-11	2016-03-18	2016-03-25	2016-04-01	2016-04-08	2016-04-15	2016-04-22	2016-04-29	2016-05-06	2016-05-13	2016-05-20	2016-05-27	2016-06-03	2016-06-10	2016-06-17	2016-06-24	2016-07-01	2016-07-08	2016-07-15	2016-07-22	2016-07-29	2016-08-05	2016-08-12	2016-08-19	2016-08-26	2016-09-02	2016-09-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_12260.2	NR_all_12260.1	2.19	(8) 3IRW\|1\|R, 3MUR\|1\|R, 3MXH\|1\|R, 3UCZ\|1\|R, 3MUM\|1\|R, 3MUT\|1\|R, 3UCU\|1\|R, 3UD4\|1\|R	(1) 4YB1\|1\|R	(4) 3IWN\|1\|A, 3IWN\|1\|B, 3MUV\|1\|R, 3UD3\|1\|R

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_12260.2	NR_3.0_12260.3	2.93	(9) 3IRW\|1\|R, 3MUM\|1\|R, 3MUR\|1\|R, 3MUT\|1\|R, 3MXH\|1\|R, 3UCU\|1\|R, 3UCZ\|1\|R, 3UD4\|1\|R, 4YB1\|1\|R	(0)	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	3MXH\|1\|R	Native structure of a c-di-GMP riboswitch from V. cholerae	X-RAY DIFFRACTION	2.3	91
2	3MUM\|1\|R	Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP	X-RAY DIFFRACTION	2.9	91
3	3MUT\|1\|R	Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP	X-RAY DIFFRACTION	3	91
4	3MUR\|1\|R	Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP	X-RAY DIFFRACTION	3	91
5	3UCZ\|1\|R	The c-di-GMP-I riboswitch bound to GpG	X-RAY DIFFRACTION	2.8	91
6	3UCU\|1\|R	The c-di-GMP-I riboswitch bound to pGpG	X-RAY DIFFRACTION	2.8	91
7	3UD4\|1\|R	The C92U mutant c-di-GMP-I riboswitch bound to GpA	X-RAY DIFFRACTION	2.7	91
8	3IRW\|1\|R	Structure of a c-di-GMP riboswitch from V. cholerae	X-RAY DIFFRACTION	2.7	90
9	4YB1\|1\|R	20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMP	X-RAY DIFFRACTION	2.08	91

Equivalence class NR_3.0_12260.2 Obsolete

Release history

Parents

Children