Equivalence class NR_3.0_25585.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4Z4D|1|B+ 4Z4D|1|D (rep) | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*G)-3') | synthetic construct | Synthetic | Human Argonaute2 Bound to t1-G Target RNA | X-ray diffraction | 1.6 | 2015-09-23 | ||
2 | 4W5O|1|B+ 4W5O|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | Synthetic | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-ray diffraction | 1.8 | 2014-11-12 | ||
3 | 4Z4I|1|B+ 4Z4I|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3') | synthetic construct | Synthetic | Human Argonaute2 A481T Mutant Bound to t1-G Target RNA | X-ray diffraction | 2.8 | 2015-09-23 | ||
4 | 4Z4H|1|B+ 4Z4H|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3') | synthetic construct | Synthetic | Human Argonaute2 A481T Mutant Bound to t1-A Target RNA | X-ray diffraction | 2.5 | 2015-09-23 | ||
5 | 4Z4G|1|B+ 4Z4G|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-D(P*(IMP))-3') | synthetic construct | Synthetic | Human Argonaute2 Bound to t1-Inosine Target RNA | X-ray diffraction | 2.7 | 2015-09-23 | ||
6 | 4Z4C|1|B+ 4Z4C|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*C)-3') | synthetic construct | Synthetic | Human Argonaute2 Bound to t1-C Target RNA | X-ray diffraction | 2.3 | 2015-09-23 | ||
7 | 4Z4E|1|B+ 4Z4E|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*U)-3') | synthetic construct | Synthetic | Human Argonaute2 Bound to t1-U Target RNA | X-ray diffraction | 1.8 | 2015-09-23 | ||
8 | 4Z4F|1|B+ 4Z4F|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*(N6G)P*A)-3') | synthetic construct | Synthetic | Human Argonaute2 Bound to t1-DAP Target RNA | X-ray diffraction | 2.8 | 2015-09-23 | ||
9 | 4W5N|1|B | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*CP*AP*AP*GP*UP*CP*UP*CP*UP*U)-3') | synthetic construct | Synthetic | The Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNA | X-ray diffraction | 2.9 | 2014-11-12 | ||
10 | 4W5T|1|B+ 4W5T|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*UP*U)-3'), RNA (5'-R(*AP*CP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | Synthetic | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7 | X-ray diffraction | 2.5 | 2014-11-12 | ||
11 | 4W5R|1|B+ 4W5R|1|D | RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*UP*U)-3'), RNA (5'-R(P*AP*AP*UP*GP*UP*GP*AP*AP*A)-3') | synthetic construct | Synthetic | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target) | X-ray diffraction | 2.5 | 2014-11-12 |
Release history
Release | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
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Date | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_3.0_25585.1 | NR_all_17418.1 | 2.42 | (4) 4W5N|1|B, 4W5O|1|B+4W5O|1|D, 4W5R|1|B+4W5R|1|D, 4W5T|1|B+4W5T|1|D | (7) 4Z4E|1|B+4Z4E|1|D, 4Z4G|1|B+4Z4G|1|D, 4Z4I|1|B+4Z4I|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4F|1|B+4Z4F|1|D, 4Z4H|1|B+4Z4H|1|D, 4Z4C|1|B+4Z4C|1|D | (1) 4W5Q|1|B+4W5Q|1|D |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_3.0_25585.1 | NR_3.0_25585.2 | 2.93 | (10) 4Z4F|1|B+4Z4F|1|D, 4Z4H|1|B+4Z4H|1|D, 4W5R|1|B+4W5R|1|D, 4Z4C|1|B+4Z4C|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4G|1|B+4Z4G|1|D, 4W5O|1|B+4W5O|1|D, 4Z4I|1|B+4Z4I|1|D, 4W5T|1|B+4W5T|1|D, 4Z4D|1|B+4Z4D|1|D | (1) 4W5N|1|B | (0) |
NR_3.0_25585.1 | NR_3.0_83036.1 | 2.93 | (1) 4W5N|1|B | (10) 4Z4E|1|B+4Z4E|1|D, 4Z4G|1|B+4Z4G|1|D, 4W5O|1|B+4W5O|1|D, 4Z4I|1|B+4Z4I|1|D, 4W5T|1|B+4W5T|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4F|1|B+4Z4F|1|D, 4Z4H|1|B+4Z4H|1|D, 4W5R|1|B+4W5R|1|D, 4Z4C|1|B+4Z4C|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 4Z4C|1|B+4Z4C|1|D | Human Argonaute2 Bound to t1-C Target RNA | X-RAY DIFFRACTION | 2.3 | 19 |
2 | 4Z4E|1|B+4Z4E|1|D | Human Argonaute2 Bound to t1-U Target RNA | X-RAY DIFFRACTION | 1.8 | 19 |
3 | 4Z4F|1|B+4Z4F|1|D | Human Argonaute2 Bound to t1-DAP Target RNA | X-RAY DIFFRACTION | 2.8 | 18 |
4 | 4Z4D|1|B+4Z4D|1|D | Human Argonaute2 Bound to t1-G Target RNA | X-RAY DIFFRACTION | 1.6 | 20 |
5 | 4Z4I|1|B+4Z4I|1|D | Human Argonaute2 A481T Mutant Bound to t1-G Target RNA | X-RAY DIFFRACTION | 2.8 | 20 |
6 | 4Z4G|1|B+4Z4G|1|D | Human Argonaute2 Bound to t1-Inosine Target RNA | X-RAY DIFFRACTION | 2.7 | 20 |
7 | 4Z4H|1|B+4Z4H|1|D | Human Argonaute2 A481T Mutant Bound to t1-A Target RNA | X-RAY DIFFRACTION | 2.5 | 20 |
8 | 4W5O|1|B+4W5O|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-RAY DIFFRACTION | 1.8 | 20 |
9 | 4W5T|1|B+4W5T|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7 | X-RAY DIFFRACTION | 2.5 | 16 |
10 | 4W5R|1|B+4W5R|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target) | X-RAY DIFFRACTION | 2.5 | 11 |
11 | 4W5N|1|B | The Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNA | X-RAY DIFFRACTION | 2.9 | 18 |