BGSU RNA Site //

Equivalence class NR_3.0_25585.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14Z4D|1|B+ 4Z4D|1|D (rep)RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*G)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-G Target RNAX-RAY DIFFRACTION1.62015-09-23
24W5O|1|B+ 4W5O|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9X-RAY DIFFRACTION1.82014-11-12
34Z4I|1|B+ 4Z4I|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3')synthetic constructSyntheticHuman Argonaute2 A481T Mutant Bound to t1-G Target RNAX-RAY DIFFRACTION2.82015-09-23
44Z4H|1|B+ 4Z4H|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3')synthetic constructSyntheticHuman Argonaute2 A481T Mutant Bound to t1-A Target RNAX-RAY DIFFRACTION2.52015-09-23
54Z4G|1|B+ 4Z4G|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-D(P*(IMP))-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-Inosine Target RNAX-RAY DIFFRACTION2.72015-09-23
64Z4C|1|B+ 4Z4C|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*C)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-C Target RNAX-RAY DIFFRACTION2.32015-09-23
74Z4E|1|B+ 4Z4E|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*U)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-U Target RNAX-RAY DIFFRACTION1.82015-09-23
84Z4F|1|B+ 4Z4F|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*UP*U)-3'), RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*(N6G)P*A)-3')synthetic constructSyntheticHuman Argonaute2 Bound to t1-DAP Target RNAX-RAY DIFFRACTION2.82015-09-23
94W5N|1|BRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*CP*AP*AP*GP*UP*CP*UP*CP*UP*U)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNAX-RAY DIFFRACTION2.92014-11-12
104W5T|1|B+ 4W5T|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*UP*U)-3'), RNA (5'-R(*AP*CP*AP*UP*GP*UP*GP*AP*AP*A)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7X-RAY DIFFRACTION2.52014-11-12
114W5R|1|B+ 4W5R|1|DRNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*UP*U)-3'), RNA (5'-R(P*AP*AP*UP*GP*UP*GP*AP*AP*A)-3')synthetic constructSyntheticThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target)X-RAY DIFFRACTION2.52014-11-12

Release history

Release2.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_25585.1NR_all_17418.12.42(4) 4W5O|1|B+4W5O|1|D, 4W5T|1|B+4W5T|1|D, 4W5R|1|B+4W5R|1|D, 4W5N|1|B(7) 4Z4H|1|B+4Z4H|1|D, 4Z4C|1|B+4Z4C|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4G|1|B+4Z4G|1|D, 4Z4I|1|B+4Z4I|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4F|1|B+4Z4F|1|D(1) 4W5Q|1|B+4W5Q|1|D

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_25585.1NR_3.0_25585.22.93(10) 4Z4I|1|B+4Z4I|1|D, 4W5T|1|B+4W5T|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4F|1|B+4Z4F|1|D, 4Z4H|1|B+4Z4H|1|D, 4W5R|1|B+4W5R|1|D, 4Z4C|1|B+4Z4C|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4G|1|B+4Z4G|1|D, 4W5O|1|B+4W5O|1|D(1) 4W5N|1|B(0)
NR_3.0_25585.1NR_3.0_83036.12.93(1) 4W5N|1|B(10) 4Z4H|1|B+4Z4H|1|D, 4W5R|1|B+4W5R|1|D, 4Z4C|1|B+4Z4C|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4G|1|B+4Z4G|1|D, 4W5O|1|B+4W5O|1|D, 4Z4I|1|B+4Z4I|1|D, 4W5T|1|B+4W5T|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4F|1|B+4Z4F|1|D(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14Z4C|1|B+4Z4C|1|DHuman Argonaute2 Bound to t1-C Target RNAX-RAY DIFFRACTION2.319
24Z4E|1|B+4Z4E|1|DHuman Argonaute2 Bound to t1-U Target RNAX-RAY DIFFRACTION1.819
34Z4F|1|B+4Z4F|1|DHuman Argonaute2 Bound to t1-DAP Target RNAX-RAY DIFFRACTION2.818
44Z4D|1|B+4Z4D|1|DHuman Argonaute2 Bound to t1-G Target RNAX-RAY DIFFRACTION1.620
54Z4I|1|B+4Z4I|1|DHuman Argonaute2 A481T Mutant Bound to t1-G Target RNAX-RAY DIFFRACTION2.820
64Z4G|1|B+4Z4G|1|DHuman Argonaute2 Bound to t1-Inosine Target RNAX-RAY DIFFRACTION2.720
74Z4H|1|B+4Z4H|1|DHuman Argonaute2 A481T Mutant Bound to t1-A Target RNAX-RAY DIFFRACTION2.520
84W5O|1|B+4W5O|1|DThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9X-RAY DIFFRACTION1.820
94W5T|1|B+4W5T|1|DThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7X-RAY DIFFRACTION2.516
104W5R|1|B+4W5R|1|DThe Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target)X-RAY DIFFRACTION2.511
114W5N|1|BThe Crystal Structure of Human Argonaute2 Bound to a Defined Guide RNAX-RAY DIFFRACTION2.918