Equivalence class NR_3.0_33592.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6SAG|1|R (rep) | RNA (5'-R(P*GP*AP*A)-3') | Tobacco mosaic virus | Viruses | Cryo-EM structure of TMV with Ca2+ at low pH | Electron microscopy | 2 | 2019-09-18 | ||
| 2 | 1RMV|1|B | RIBGRASS MOSAIC VIRUS RNA | Ribgrass mosaic virus | Viruses | RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION | Fiber diffraction | 2.9 | 1997-05-15 | ||
| 3 | 2TMV|1|R | RNA (5'-R(P*GP*AP*A)-3') | VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | Fiber diffraction | 2.9 | 1989-01-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_33592.4 | NR_3.0_33592.3 | 3.92 | (2) 2TMV|1|R, 1RMV|1|B | (1) 6SAG|1|R | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_33592.4 | NR_3.0_35023.1 | 3.98 | (1) 6SAG|1|R | (2) 2TMV|1|R, 1RMV|1|B | (0) |
| NR_3.0_33592.4 | NR_3.0_53179.1 | 3.98 | (1) 1RMV|1|B | (2) 2TMV|1|R, 6SAG|1|R | (0) |
| NR_3.0_33592.4 | NR_3.0_66187.1 | 3.98 | (1) 2TMV|1|R | (2) 1RMV|1|B, 6SAG|1|R | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 1RMV|1|B | RIBGRASS MOSAIC VIRUS, FIBER DIFFRACTION | FIBER DIFFRACTION | 2.9 | 3 |
| 2 | 2TMV|1|R | VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION | FIBER DIFFRACTION | 2.9 | 3 |
| 3 | 6SAG|1|R | Cryo-EM structure of TMV with Ca2+ at low pH | ELECTRON MICROSCOPY | 2 | 3 |