Equivalence class NR_3.0_34856.5 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 2P7D|D (rep) | A Minimal, 'Hinged' Hairpin Ribozyme Construct Solved with Mimics of the Product Strands at 2.25 Angstroms Resolution | X-ray diffraction | 2.25 | 2007-05-22 | |||||
2 | 1X9C|D | An all-RNA Hairpin Ribozyme with mutation U39C | X-ray diffraction | 2.19 | 2005-11-22 | |||||
3 | 1X9K|D | An all-RNA Hairpin Ribozyme with mutation U39C | X-ray diffraction | 3.17 | 2005-11-22 | |||||
4 | 1ZFT|D | The crystal structure of an all-RNA minimal Hairpin Ribozyme with mutant G8I at the cleavage site | X-ray diffraction | 2.33 | 2006-02-14 | |||||
5 | 1ZFV|D | The structure of an all-RNA minimal Hairpin Ribozyme with Mutation G8A at the cleavage site | X-ray diffraction | 2.4 | 2006-02-14 | |||||
6 | 1ZFX|D | The Structure of a minimal all-RNA Hairpin Ribozyme with the mutant G8U at the cleavage site | X-ray diffraction | 2.38 | 2006-02-14 | |||||
7 | 2BCY|D | Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8MTU) | X-ray diffraction | 2.7 | 2006-02-14 | |||||
8 | 2BCZ|D | Crystal Structure of a minimal, mutant all-RNA hairpin ribozyme (U39C, G8I, 2'deoxy A-1) | X-ray diffraction | 2.4 | 2006-02-14 | |||||
9 | 2D2K|D | Crystal Structure of a minimal, native (U39) all-RNA hairpin ribozyme | X-ray diffraction | 2.65 | 2005-11-01 | |||||
10 | 2FGP|D | Crystal structure of a minimal, all RNA hairpin ribozyme with modifications (g8dap, u39c) at ph 8.6 | X-ray diffraction | 2.4 | 2006-02-14 | |||||
11 | 2NPY|D | Crystal Structure of a junctioned hairpin ribozyme incorporating 9atom linker and 2'-deoxy 2'-amino U at A-1 | X-ray diffraction | 2.65 | 2007-08-14 | |||||
12 | 2NPZ|D | Crystal structure of junctioned hairpin ribozyme incorporating synthetic propyl linker | X-ray diffraction | 3.35 | 2007-08-14 | |||||
13 | 2OUE|D | Crystal structure of a junctionless all-RNA hairpin ribozyme at 2.05 angstroms resolution | X-ray diffraction | 2.05 | 2007-03-06 | |||||
14 | 2P7E|D | Vanadate at the Active Site of a Small Ribozyme Suggests a Role for Water in Transition-State Stabilization | X-ray diffraction | 2.05 | 2007-05-22 | |||||
15 | 2P7F|D | The Novel Use of a 2',5'-Phosphodiester Linkage as a Reaction Intermediate at the Active Site of a Small Ribozyme | X-ray diffraction | 2.35 | 2007-05-22 | |||||
16 | 3GS1|D | An all-RNA Hairpin Ribozyme with mutation A38N1dA | X-ray diffraction | 2.85 | 2009-05-12 | |||||
17 | 3GS5|C | An all-RNA hairpin ribozyme A38N1dA variant with a product mimic substrate strand | X-ray diffraction | 2.75 | 2009-04-21 | |||||
18 | 3GS8|D | An all-RNA hairpin ribozyme A38N1dA38 variant with a transition-state mimic substrate strand | X-ray diffraction | 2.85 | 2009-04-21 | |||||
19 | 4G6R|D | Minimal Hairpin Ribozyme in the Transition State with G8I Variation | X-ray diffraction | 2.83 | 2012-08-15 |
Release history
Release | 0.83 | 0.84 | 0.85 | 0.86 | 0.87 | 0.88 | 0.89 | 0.90 | 0.91 | 0.92 | 0.93 | 0.94 | 0.95 | 0.96 | 0.97 | 0.98 | 0.99 | 0.100 | 0.101 | 0.102 | 0.103 | 0.104 | 0.105 | 0.106 | 0.107 | 0.108 | 0.109 | 0.110 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 | 1.19 | 1.20 | 1.21 | 1.22 | 1.23 | 1.24 | 1.25 | 1.26 | 1.27 | 1.28 | 1.29 | 1.30 | 1.31 | 1.32 | 1.33 | 1.34 | 1.35 | 1.36 | 1.37 | 1.38 | 1.39 | 1.40 | 1.41 | 1.42 | 1.43 | 1.44 | 1.45 | 1.46 | 1.47 | 1.48 | 1.49 | 1.50 | 1.51 | 1.52 | 1.53 | 1.54 | 1.55 | 1.56 | 1.57 | 1.58 | 1.59 | 1.60 | 1.61 | 1.62 | 1.63 | 1.64 | 1.65 | 1.66 | 1.67 | 1.68 | 1.69 | 1.70 | 1.71 | 1.72 | 1.73 | 1.74 | 1.75 | 1.76 | 1.77 | 1.78 | 1.79 | 1.80 | 1.81 | 1.82 | 1.83 | 1.84 | 1.85 | 1.86 | 1.87 | 1.88 | 1.89 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Date | 2012-08-18 | 2012-08-25 | 2012-09-01 | 2012-09-08 | 2012-09-15 | 2012-09-22 | 2012-09-29 | 2012-10-06 | 2012-10-13 | 2012-10-20 | 2012-10-27 | 2012-11-03 | 2012-11-10 | 2012-11-17 | 2012-11-24 | 2012-12-01 | 2012-12-08 | 2012-12-15 | 2012-12-22 | 2012-12-29 | 2013-01-05 | 2013-01-12 | 2013-01-19 | 2013-01-26 | 2013-02-02 | 2013-02-09 | 2013-02-16 | 2013-02-23 | 2013-03-02 | 2013-03-09 | 2013-03-16 | 2013-03-23 | 2013-03-30 | 2013-04-06 | 2013-04-13 | 2013-04-20 | 2013-04-27 | 2013-05-04 | 2013-05-11 | 2013-05-18 | 2013-05-25 | 2013-06-01 | 2013-06-08 | 2013-06-15 | 2013-06-22 | 2013-06-29 | 2013-07-06 | 2013-07-13 | 2013-07-20 | 2013-07-27 | 2013-08-03 | 2013-08-10 | 2013-08-17 | 2013-08-24 | 2013-08-31 | 2013-09-07 | 2013-09-14 | 2013-09-21 | 2013-09-28 | 2013-10-05 | 2013-10-12 | 2013-10-19 | 2013-10-26 | 2013-11-09 | 2013-11-16 | 2013-11-23 | 2013-11-30 | 2013-12-07 | 2013-12-14 | 2013-12-21 | 2013-12-28 | 2014-01-04 | 2014-01-11 | 2014-01-18 | 2014-01-25 | 2014-02-01 | 2014-02-08 | 2014-02-15 | 2014-02-22 | 2014-03-01 | 2014-03-08 | 2014-03-17 | 2014-03-22 | 2014-03-29 | 2014-04-05 | 2014-04-12 | 2014-04-19 | 2014-04-26 | 2014-05-03 | 2014-05-10 | 2014-05-17 | 2014-05-31 | 2014-06-07 | 2014-06-13 | 2014-06-20 | 2014-06-27 | 2014-07-04 | 2014-07-18 | 2014-07-25 | 2014-08-01 | 2014-08-08 | 2014-08-15 | 2014-08-22 | 2014-08-29 | 2014-09-05 | 2014-09-12 | 2014-09-19 | 2014-09-26 | 2014-10-03 | 2014-10-10 | 2014-10-17 | 2014-10-24 | 2014-10-31 | 2014-11-07 | 2014-11-14 | 2014-11-21 | 2014-11-28 | 2014-12-05 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|