Equivalence class NR_3.0_35133.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2Z75|1|B (rep) | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-ray diffraction | 1.7 | 2007-09-04 |
| 2 | 2GCV|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 2006-09-26 | ||
| 3 | 2Z74|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme RNA | RF00234 | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.2 | 2007-09-04 | ||
| 4 | 2H0X|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.3 | 2006-09-26 | ||
| 5 | 2H0W|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme product oligonucleotide, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.4 | 2006-09-26 | ||
| 6 | 2GCS|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme amino RNA inhibitor, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.1 | 2006-09-26 | ||
| 7 | 3B4B|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate with 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 2.7 | 2007-12-11 |
| 8 | 2HO6|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate RNA, glmS ribozyme RNA | RF00234 | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-ray diffraction | 2.8 | 2006-09-26 | ||
| 9 | 2HO7|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate RNA, glmS ribozyme RNA | RF00234 | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-ray diffraction | 2.9 | 2006-09-26 | ||
| 10 | 3B4A|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate RNA, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-ray diffraction | 2.7 | 2007-12-11 |
| 11 | 3B4C|1|B | glmS glucosamine-6-phosphate activated ribozyme | glmS ribozyme substrate with a 2'5'-phosphodiester linkage, glmS ribozyme RNA | Caldanaerobacter subterraneus | Bacteria | RF00234 | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-ray diffraction | 3 | 2007-12-11 |
Release history
| Release | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 2GCV|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 |
| 2 | 2H0W|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.4 | 122 |
| 3 | 2HO6|1|B | Post-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.8 | 122 |
| 4 | 2HO7|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.9 | 122 |
| 5 | 3B4B|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 2.7 | 123 |
| 6 | 2GCS|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.1 | 122 |
| 7 | 2H0X|1|B | Pre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme | X-RAY DIFFRACTION | 2.3 | 122 |
| 8 | 2Z75|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 1.7 | 123 |
| 9 | 2Z74|1|B | T. tengcongensis glmS ribozyme bound to glucose-6-phosphate | X-RAY DIFFRACTION | 2.2 | 123 |
| 10 | 3B4A|1|B | T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate | X-RAY DIFFRACTION | 2.7 | 121 |
| 11 | 3B4C|1|B | T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkage | X-RAY DIFFRACTION | 3 | 121 |