NR_3.0_35542.30

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Å	Date
1	4V9R\|1\|AX (rep)	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
2	4V9R\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
3	4V67\|1\|AY	Transfer RNA	P AND E-SITE TRNA(FMET), MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
4	4V67\|1\|CY	Transfer RNA	P AND E-SITE TRNA(FMET), MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
5	5MDV\|1\|5	Transfer RNA	fMet-NH-tRNA(fMet), mRNA	Escherichia coli	Bacteria	RF00005	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
6	4Z3S\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
7	5DOY\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
8	4V8B\|1\|AC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
9	4V67\|1\|AZ	Transfer RNA	P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
10	4V8B\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
11	4V67\|1\|CZ	Transfer RNA	P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
12	4LNT\|1\|XV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
13	5HCP\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.89	2016-04-06
14	5HCQ\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-04-06
15	5HCR\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-04-06
16	4Y4P\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
17	4Y4P\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
18	4Z8C\|1\|2x	Transfer RNA	Initiator Methionine tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
19	4W2I\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
20	4W2G\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
21	4W2H\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
22	4W2F\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
23	1VY5\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
24	4W2I\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
25	4W2G\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
26	4W2F\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
27	1VY5\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
28	5DOY\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
29	5IBB\|1\|2L	Transfer RNA	tRNAfMet, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	2016-05-25
30	4Z3S\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
31	1VY6\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
32	1VY4\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
33	1VY7\|1\|AX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
34	1VY6\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
35	4WPO\|1\|DX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
36	4V8D\|1\|AC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
37	4LNT\|1\|QV	Transfer RNA	P-site tRNA fMet, messenger RNA, A-site ASL SufA6	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
38	5HAU\|1\|1w	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	3	2016-04-06
39	4Z8C\|1\|1x	Transfer RNA	Initiator Methionine tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
40	5J4B\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2016-04-27
41	5HD1\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.7	2016-04-06
42	5IB7\|1\|2K	Transfer RNA	tRNAfMet, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	2016-05-25
43	4WSD\|1\|2K	Transfer RNA	tRNA-fMet, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
44	5IBB\|1\|2K	Transfer RNA	tRNAfMet, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	2016-05-25
45	5HAU\|1\|2w	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	3	2016-04-06
46	5J4C\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution	X-ray diffraction	2.8	2016-04-27
47	5HD1\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.7	2016-04-06
48	5HCP\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.89	2016-04-06
49	5HCR\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-04-06
50	5J4B\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2016-04-27
51	5HCQ\|1\|2x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-04-06
52	4WQY\|1\|BX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
53	4V8D\|1\|CC	Transfer RNA	TRNA-FMET, MRNA	Escherichia coli	Bacteria	RF00005	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
54	4WPO\|1\|BX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
55	5F8K\|1\|1x	Transfer RNA	tRNAiMet, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-02-03
56	5J4C\|1\|1x	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution	X-ray diffraction	2.8	2016-04-27
57	4WSD\|1\|2L	Transfer RNA	tRNA-fMet, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
58	5F8K\|1\|2x	Transfer RNA	tRNAiMet, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-02-03
59	4W2H\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
60	4WQY\|1\|DX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
61	4V51\|1\|AV	Transfer RNA	P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
62	4V51\|1\|CV	Transfer RNA	P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
63	4V7L\|1\|AX	Transfer RNA	tRNA-Met, RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3')	Escherichia coli	Bacteria	RF00005	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
64	1VY4\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
65	1VY7\|1\|CX	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
66	5IB7\|1\|2L	Transfer RNA	tRNAfMet, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	2016-05-25
67	2FMT\|1\|C	Transfer RNA	FORMYL-METHIONYL-TRNAFMET2	synthetic construct	Synthetic	RF00005	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-ray diffraction	2.8	1999-07-29
68	2FMT\|1\|D	Transfer RNA	FORMYL-METHIONYL-TRNAFMET2	synthetic construct	Synthetic	RF00005	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-ray diffraction	2.8	1999-07-29
69	5AFI\|1\|v	Transfer RNA	P-site fMet-tRNAfMet, mRNA	Escherichia coli	Bacteria	RF00005	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
70	5IQR\|1\|5	Transfer RNA	P-site fMet-tRNA(fMet), mRNA	Escherichia coli	Bacteria	RF00005	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
71	4V7L\|1\|CX	Transfer RNA	tRNA-Met, RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3')	Escherichia coli	Bacteria	RF00005	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
72	4V8B\|1\|AD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
73	4V8B\|1\|CD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
74	5AFI\|1\|w	Transfer RNA	P-site fMet-tRNAfMet	Escherichia coli	Bacteria	RF00005	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11

Release history

Release	2.106
Date	2016-12-16

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_35542.30	NR_3.0_35542.29	2.106	(73) 5HD1\|1\|1x, 4W2G\|1\|AX, 5HCR\|1\|2x, 4W2F\|1\|CX, 5HCR\|1\|1x, 4W2F\|1\|AX, 5HCQ\|1\|2x, 4V9R\|1\|CX, 5HCQ\|1\|1x, 4V9R\|1\|AX, 5HCP\|1\|2x, 4V8D\|1\|CC, 5HCP\|1\|1x, 4V8D\|1\|AC, 5HAU\|1\|2w, 4V8B\|1\|CD, 5HAU\|1\|1w, 4V8B\|1\|CC, 5F8K\|1\|2x, 4V8B\|1\|AD, 5F8K\|1\|1x, 4V8B\|1\|AC, 5DOY\|1\|2x, 4V7L\|1\|CX, 4V7L\|1\|AX, 5DOY\|1\|1x, 4V67\|1\|CZ, 5AFI\|1\|w, 4V67\|1\|CY, 5AFI\|1\|v, 4V67\|1\|AZ, 4Z8C\|1\|2x, 4V67\|1\|AY, 4Z8C\|1\|1x, 4V51\|1\|CV, 4Z3S\|1\|2x, 4V51\|1\|AV, 4Z3S\|1\|1x, 4LNT\|1\|XV, 4Y4P\|1\|2x, 4LNT\|1\|QV, 4Y4P\|1\|1x, 2FMT\|1\|D, 4WSD\|1\|2L, 5J4C\|1\|2x, 2FMT\|1\|C, 4WSD\|1\|2K, 5J4C\|1\|1x, 1VY7\|1\|CX, 4WQY\|1\|DX, 5J4B\|1\|2x, 1VY7\|1\|AX, 4WQY\|1\|BX, 5J4B\|1\|1x, 1VY6\|1\|CX, 4WPO\|1\|DX, 5IQR\|1\|5, 1VY6\|1\|AX, 4WPO\|1\|BX, 5IBB\|1\|2L, 1VY5\|1\|CX, 4W2I\|1\|CX, 5IBB\|1\|2K, 1VY5\|1\|AX, 4W2I\|1\|AX, 5IB7\|1\|2L, 1VY4\|1\|CX, 4W2H\|1\|CX, 5IB7\|1\|2K, 1VY4\|1\|AX, 4W2H\|1\|AX, 5HD1\|1\|2x, 4W2G\|1\|CX	(1) 5MDV\|1\|5	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_35542.30	NR_3.0_35542.31	2.107	(74) 5MDV\|1\|5, 5F8K\|1\|2x, 5F8K\|1\|1x, 5DOY\|1\|2x, 5DOY\|1\|1x, 5AFI\|1\|w, 5AFI\|1\|v, 4Z8C\|1\|2x, 4Z8C\|1\|1x, 4Z3S\|1\|2x, 4Z3S\|1\|1x, 4Y4P\|1\|2x, 4Y4P\|1\|1x, 4WSD\|1\|2L, 4WSD\|1\|2K, 4WQY\|1\|DX, 4WQY\|1\|BX, 5HAU\|1\|1w, 5HAU\|1\|2w, 5HCP\|1\|1x, 5J4C\|1\|2x, 5J4C\|1\|1x, 5J4B\|1\|2x, 5J4B\|1\|1x, 5IQR\|1\|5, 5IBB\|1\|2L, 5IBB\|1\|2K, 5IB7\|1\|2L, 5IB7\|1\|2K, 5HD1\|1\|2x, 5HD1\|1\|1x, 5HCR\|1\|2x, 5HCR\|1\|1x, 5HCQ\|1\|2x, 5HCQ\|1\|1x, 5HCP\|1\|2x, 4WPO\|1\|DX, 4WPO\|1\|BX, 4V67\|1\|CY, 4V67\|1\|AZ, 4V67\|1\|AY, 4V51\|1\|CV, 4V51\|1\|AV, 4LNT\|1\|XV, 4LNT\|1\|QV, 2FMT\|1\|D, 2FMT\|1\|C, 1VY7\|1\|CX, 1VY7\|1\|AX, 1VY6\|1\|CX, 1VY6\|1\|AX, 1VY5\|1\|CX, 1VY5\|1\|AX, 1VY4\|1\|CX, 4V67\|1\|CZ, 4V7L\|1\|AX, 4V7L\|1\|CX, 4W2I\|1\|CX, 4W2I\|1\|AX, 4W2H\|1\|CX, 4W2H\|1\|AX, 4W2G\|1\|CX, 4W2G\|1\|AX, 4W2F\|1\|CX, 4W2F\|1\|AX, 4V9R\|1\|CX, 4V9R\|1\|AX, 4V8D\|1\|CC, 4V8D\|1\|AC, 4V8B\|1\|CD, 4V8B\|1\|CC, 4V8B\|1\|AD, 4V8B\|1\|AC, 1VY4\|1\|AX	(0)	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5IQR\|1\|5	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	72
2	5MDV\|1\|5	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	70
3	5AFI\|1\|v	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	73
4	5F8K\|1\|2x	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	72
5	5F8K\|1\|1x	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	72
6	4W2H\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	72
7	4V9R\|1\|AX	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	76
8	4WQY\|1\|BX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	72
9	4WPO\|1\|BX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	71
10	4Y4P\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	72
11	5J4B\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	72
12	5J4C\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution	X-RAY DIFFRACTION	2.8	72
13	4W2F\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	72
14	1VY6\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	71
15	1VY7\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	71
16	4W2G\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	72
17	1VY5\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	72
18	1VY4\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	71
19	4W2I\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	72
20	5DOY\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	71
21	5HAU\|1\|1w	Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	3	72
22	5HAU\|1\|2w	Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	3	72
23	5HCP\|1\|1x	Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.89	72
24	5HCR\|1\|1x	Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	72
25	5HD1\|1\|1x	Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.7	72
26	5HCQ\|1\|1x	Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	72
27	4Z8C\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	72
28	4Z8C\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	72
29	5HCP\|1\|2x	Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.89	72
30	5HCQ\|1\|2x	Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	72
31	5HCR\|1\|2x	Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	72
32	5HD1\|1\|2x	Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.7	72
33	4Z3S\|1\|1x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	71
34	4V8B\|1\|CC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
35	4V8B\|1\|AC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
36	5IB7\|1\|2K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	72
37	5IBB\|1\|2K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	72
38	4V8D\|1\|AC	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	77
39	4WSD\|1\|2K	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	72
40	4V8D\|1\|CC	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	77
41	4WSD\|1\|2L	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	72
42	5IB7\|1\|2L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	72
43	5IBB\|1\|2L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	71
44	4V7L\|1\|CX	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	77
45	4V7L\|1\|AX	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	77
46	4V51\|1\|CV	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
47	4V51\|1\|AV	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
48	4V67\|1\|AY	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
49	4V67\|1\|CY	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
50	4LNT\|1\|QV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	77
51	4LNT\|1\|XV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	77
52	4W2I\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	72
53	5DOY\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	71
54	4Z3S\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	71
55	4V9R\|1\|CX	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	76
56	4W2H\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	72
57	1VY5\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	72
58	1VY4\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	71
59	4WQY\|1\|DX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	72
60	4WPO\|1\|DX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	71
61	4W2G\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	72
62	4W2F\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	72
63	5J4C\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution	X-RAY DIFFRACTION	2.8	72
64	5J4B\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	72
65	4Y4P\|1\|2x	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	72
66	1VY6\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	71
67	1VY7\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	71
68	5AFI\|1\|w	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	73
69	4V67\|1\|CZ	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
70	4V67\|1\|AZ	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
71	4V8B\|1\|CD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
72	4V8B\|1\|AD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
73	2FMT\|1\|D	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-RAY DIFFRACTION	2.8	72
74	2FMT\|1\|C	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-RAY DIFFRACTION	2.8	72

Equivalence class NR_3.0_35542.30 Obsolete

Release history

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