#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15FDV|1|1B (rep)5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-01-27
25FDU|1|1B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92016-01-27
34Y4O|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
44Y4O|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
55IBB|1|165S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
65HCQ|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
74WPO|1|AB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
85E81|1|165S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-ray diffraction2.952016-01-27
96CFL|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolutionX-ray diffraction2.62018-03-07
105FDV|1|2B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-01-27
115IB7|1|165S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycinX-ray diffraction2.992016-05-25
124V8I|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of YfiA bound to the 70S ribosome.X-ray diffraction2.72014-07-09
135FDU|1|2B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92016-01-27
145IBB|1|1J5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
155W4K|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
165E81|1|1J5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-ray diffraction2.952016-01-27
176CFK|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolutionX-ray diffraction2.72018-03-07
184WQU|1|AB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
195NDK|1|165S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
204WSD|1|165S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
215HCR|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
225NDK|1|1J5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
235J4B|1|1B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
244LNT|1|YB5S ribosomal RNA5S rRNAThermus thermophilusBacteriaRF00001Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-ray diffraction2.942014-08-06
256CFJ|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
264WQF|1|AB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
275IB7|1|1J5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycinX-ray diffraction2.992016-05-25
284V8D|1|BB5S ribosomal RNA5S RIBOSOMAL RNAThermus thermophilusBacteriaRF00001Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
294V8G|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of RMF bound to the 70S ribosome.X-ray diffraction32014-07-09
304W2G|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
315J4C|1|1B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
324Z8C|1|1B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-ray diffraction2.92015-05-20
335J4B|1|2B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
346CFL|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolutionX-ray diffraction2.62018-03-07
354V9R|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-ray diffraction32014-07-09
365HD1|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
375HCP|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.892016-04-06
384V9H|1|BB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-ray diffraction2.862014-07-09
394W2I|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
404V8D|1|DB5S ribosomal RNA5S RIBOSOMAL RNAThermus thermophilusBacteriaRF00001Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
415WIS|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
424Z3S|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
434WQY|1|AB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-ray diffraction2.82015-01-28
444Z8C|1|2B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-ray diffraction2.92015-05-20
454LNT|1|RB5S ribosomal RNA5S rRNAThermus thermophilusBacteriaRF00001Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-ray diffraction2.942014-08-06
461VY4|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
475HAU|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction32016-04-06
484WPO|1|CB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
494V8B|1|BB5S ribosomal RNA5S RIBOSOMAL RNAThermus thermophilusBacteriaRF00001Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
505J8B|1|B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.62016-05-25
514W2H|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
524WSD|1|1J5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
536CFK|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolutionX-ray diffraction2.72018-03-07
545J4C|1|2B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
555HAU|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction32016-04-06
565HCQ|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
571VY7|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
584W2F|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
595WIT|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
606CFJ|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
615W4K|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
621VY5|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
634W2I|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
644Y4P|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
655DOY|1|1B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
664V8G|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of RMF bound to the 70S ribosome.X-ray diffraction32014-07-09
674W2G|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
684WQF|1|CB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
695HCR|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-04-06
704Z3S|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
714V9R|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-ray diffraction32014-07-09
725HD1|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.72016-04-06
734W2F|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
741VY6|1|BB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.92014-08-20
755WIS|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
764WQU|1|CB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
771VY4|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
784WQY|1|CB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-ray diffraction2.82015-01-28
794V8B|1|DB5S ribosomal RNA5S RIBOSOMAL RNAThermus thermophilusBacteriaRF00001Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-ray diffraction32014-07-09
805F8K|1|1B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
815DOY|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
824V90|1|BB5S ribosomal RNA5S RIBOSOMAL RNAThermus thermophilusBacteriaRF00001Thermus thermophilus RibosomeX-ray diffraction2.952014-07-09
835HCP|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.892016-04-06
844Y4P|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
854W2H|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
864V51|1|BB5S ribosomal RNA5S RIBOSOMAL RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
871VY5|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
884W2E|1|B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92014-10-01
894V51|1|DB5S ribosomal RNA5S RIBOSOMAL RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
905WIT|1|2B5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
914V8I|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of YfiA bound to the 70S ribosome.X-ray diffraction2.72014-07-09
924V7L|1|BB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
931VY6|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.92014-08-20
941VY7|1|DB5S ribosomal RNA5S Ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
954V7L|1|DB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001The structures of viomycin bound to the 70S ribosome.X-ray diffraction32014-07-09
965F8K|1|2B5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.82016-02-03
974V7Y|1|BB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-ray diffraction32014-07-09
984V67|1|BB5S ribosomal RNA5S RRNAThermus thermophilusBacteriaRF00001Crystal structure of a translation termination complex formed with release factor RF2.X-ray diffraction32014-07-09
994V7X|1|BB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus ribosome complexed with erythromycin.X-ray diffraction32014-07-09
1004V7W|1|BB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-ray diffraction32014-07-09
1014V7Y|1|DB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-ray diffraction32014-07-09
1024V67|1|DB5S ribosomal RNA5S RRNAThermus thermophilusBacteriaRF00001Crystal structure of a translation termination complex formed with release factor RF2.X-ray diffraction32014-07-09
1034V7W|1|DB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-ray diffraction32014-07-09
1044V7X|1|DB5S ribosomal RNA5S ribosomal RNAThermus thermophilusBacteriaRF00001Structure of the Thermus thermophilus ribosome complexed with erythromycin.X-ray diffraction32014-07-09

Release history

Release3.153.163.17
Date2018-03-292018-04-062018-04-13

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V9H|1|BBCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.86119
24V90|1|BBThermus thermophilus RibosomeX-RAY DIFFRACTION2.95119
34LNT|1|RBCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.94120
44V8B|1|BBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION3122
54V8D|1|BBStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION3122
64WSD|1|16Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.95122
75IBB|1|16Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.96122
85E81|1|16Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.95122
95IB7|1|16Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycinX-RAY DIFFRACTION2.99122
104LNT|1|YBCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.94120
115NDK|1|16Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.95122
124W2I|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.7120
131VY7|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.8120
145DOY|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.6120
154W2H|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.7120
165HAU|1|1BCrystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3120
175J8B|1|BCrystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.6120
184V9R|1|BBCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION3120
195HCP|1|1BCrystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.89120
204Z8C|1|1BCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.9120
215HCQ|1|1BCrystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
225HCR|1|1BCrystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
235HD1|1|1BCrystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.7120
241VY6|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.9120
255WIT|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.6120
264Z3S|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.65120
274W2G|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.55120
281VY5|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.55120
291VY4|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.6120
305W4K|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.7120
315WIS|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.7120
326CFJ|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.8120
335J4C|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.8120
345J4B|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.6120
354Y4P|1|1BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.5120
364W2F|1|BBCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.4120
374WPO|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.8120
384WQU|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.8120
394WQY|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.8120
404WQF|1|ABCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.8120
415FDU|1|1BCrystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.9121
425FDV|1|1BCrystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
434Y4O|1|1BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.3120
446CFK|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolutionX-RAY DIFFRACTION2.7120
456CFL|1|1BCrystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolutionX-RAY DIFFRACTION2.6120
465F8K|1|1BCrystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
474V8I|1|BBCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.7120
484V8I|1|DBCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.7120
494V8G|1|BBCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION3120
504V8G|1|DBCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION3120
514Y4O|1|2BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.3120
526CFK|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolutionX-RAY DIFFRACTION2.7120
536CFL|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolutionX-RAY DIFFRACTION2.6120
545FDV|1|2BCrystal structure of the Pyrrhocoricin antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
555FDU|1|2BCrystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.9120
564W2I|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.7120
574W2F|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.4120
584W2G|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.55120
591VY5|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.55120
604V9R|1|DBCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION3120
614W2H|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.7120
625F8K|1|2BCrystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
635HAU|1|2BCrystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION3120
644WQF|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.8120
654WQY|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.8120
664WPO|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.8120
674WQU|1|CBCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.8120
685HCP|1|2BCrystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.89120
695HD1|1|2BCrystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.7120
705HCR|1|2BCrystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
715HCQ|1|2BCrystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.8120
724Z8C|1|2BCrystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocinX-RAY DIFFRACTION2.9120
735WIT|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.6120
744Z3S|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.65120
755J4C|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.8120
765J4B|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.6120
776CFJ|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.8120
785W4K|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.7120
795WIS|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.7120
804Y4P|1|2BCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.5120
815DOY|1|2BCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.6120
821VY4|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.6120
831VY6|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.9120
841VY7|1|DBCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.8120
854W2E|1|BCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.9120
864V67|1|BBCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION3119
874V67|1|DBCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION3119
884V7L|1|DBThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION3118
894V7L|1|BBThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION3118
904V51|1|BBStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.8119
914V51|1|DBStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.8119
924V7Y|1|BBStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION3119
934V7Y|1|DBStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION3119
944V7X|1|BBStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION3119
954V7X|1|DBStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION3119
964V7W|1|BBStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION3119
974V7W|1|DBStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION3119
984V8B|1|DBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION3122
994V8D|1|DBStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION3122
1005NDK|1|1JCrystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.95122
1014WSD|1|1JComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.95122
1025IB7|1|1JStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycinX-RAY DIFFRACTION2.99122
1035E81|1|1JStructure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pairX-RAY DIFFRACTION2.95122
1045IBB|1|1JStructure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.96122