BGSU RNA Site //

Equivalence class NR_3.0_43481.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17M4Y|1|a (rep)Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAElectron microscopy2.52021-05-19
27M4W|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S EmptyElectron microscopy2.552021-05-19
37M4X|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNAElectron microscopy2.662021-05-19
47M4U|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 30SElectron microscopy2.712021-05-19
56V3A|1|sN1Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNAElectron microscopy2.822020-02-05
66V3B|1|sN1Small subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty stateElectron microscopy2.912020-02-05
77M4Z|1|aSmall subunit ribosomal RNA16s Ribosomal RNAAcinetobacter baumannii AB0057BacteriaRF00177A. baumannii Ribosome-Eravacycline complex: 70S with hpfElectron microscopy2.922021-05-19
86YT9|1|2Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit bodyElectron microscopy2.72020-09-16
96YPU|1|2Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-amikacin complex - 30S subunit bodyElectron microscopy2.92020-09-16
106YS5|1|3Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-amikacin complex - 30S subunit headElectron microscopy32020-09-16
116YTF|1|3Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit headElectron microscopy32020-09-16
126YT9|1|4Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit bodyElectron microscopy2.72020-09-16
136YPU|1|4Small subunit ribosomal RNA16S ribosomal RNAAcinetobacter baumanniiBacteriaRF00177Acinetobacter baumannii ribosome-amikacin complex - 30S subunit bodyElectron microscopy2.92020-09-16

Release history

Release3.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.215
Date2021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_43481.2NR_3.0_43481.13.179(8) 6YPU|1|2, 6V3B|1|sN1, 6YTF|1|3, 6V3A|1|sN1, 6YT9|1|4, 6YT9|1|2, 6YS5|1|3, 6YPU|1|4(5) 7M4Z|1|a, 7M4Y|1|a, 7M4X|1|a, 7M4W|1|a, 7M4U|1|a(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_43481.2NR_3.0_43481.33.216(13) 6V3A|1|sN1, 6YT9|1|2, 7M4X|1|a, 6YS5|1|3, 7M4W|1|a, 6YPU|1|4, 7M4U|1|a, 6YPU|1|2, 6YTF|1|3, 7M4Z|1|a, 6V3B|1|sN1, 6YT9|1|4, 7M4Y|1|a(0) (3) 7RYF|1|a, 7RYG|1|a, 7RYH|1|a

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17M4Z|1|aA. baumannii Ribosome-Eravacycline complex: 70S with hpfELECTRON MICROSCOPY2.921519
27M4X|1|aA. baumannii Ribosome-Eravacycline complex: 70S with P-tRNAELECTRON MICROSCOPY2.661519
36YT9|1|2Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit bodyELECTRON MICROSCOPY2.7894
47M4U|1|aA. baumannii Ribosome-Eravacycline complex: 30SELECTRON MICROSCOPY2.711519
57M4W|1|aA. baumannii Ribosome-Eravacycline complex: 70S EmptyELECTRON MICROSCOPY2.551519
67M4Y|1|aA. baumannii Ribosome-Eravacycline complex: 70S with E-tRNAELECTRON MICROSCOPY2.51519
76YPU|1|2Acinetobacter baumannii ribosome-amikacin complex - 30S subunit bodyELECTRON MICROSCOPY2.9894
86V3B|1|sN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty stateELECTRON MICROSCOPY2.911519
96V3A|1|sN1Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNAELECTRON MICROSCOPY2.821519
106YS5|1|3Acinetobacter baumannii ribosome-amikacin complex - 30S subunit headELECTRON MICROSCOPY3453
116YTF|1|3Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit headELECTRON MICROSCOPY3453
126YT9|1|4Acinetobacter baumannii ribosome-tigecycline complex - 30S subunit bodyELECTRON MICROSCOPY2.7146
136YPU|1|4Acinetobacter baumannii ribosome-amikacin complex - 30S subunit bodyELECTRON MICROSCOPY2.9146