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Equivalence class NR_3.0_56726.15 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15J5B|1|BA (rep)Small subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
25J91|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
35J91|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
45J5B|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
55J7L|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
65J7L|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
74V9P|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
84YBB|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
94V9O|1|FASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
105IQR|1|2Small subunit ribosomal RNASSU rRNAEscherichia coliBacteriaRF00177Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
114U1U|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
124V9O|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
135AFI|1|aSmall subunit ribosomal RNA16S ribosomal RNAEscherichia coliBacteriaRF001772.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
144U20|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
154V9P|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
164U1U|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
174U26|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
184U24|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
194YBB|1|BASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
204U20|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
214U27|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
224V9P|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
234U25|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
244V9O|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
254U1V|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
264WOI|1|DASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
274V9P|1|DASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
284V9D|1|BASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
294U27|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
304U1V|1|AASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
314V9D|1|AASmall subunit ribosomal RNA16S rRNA, messenger RNAEscherichia coliBacteriaRF00177Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
324U25|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
334WOI|1|AASmall subunit ribosomal RNA16S ribosomal RNA, Messenger RNAEscherichia coliBacteriaRF001774,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
344U26|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
354U24|1|CASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
364V9O|1|HASmall subunit ribosomal RNA16S rRNAEscherichia coliBacteriaRF00177Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09

Release history

Release2.892.902.912.922.932.94
Date2016-08-192016-08-262016-09-022016-09-092016-09-162016-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_56726.15NR_all_56726.142.89(36) 4V9O|1|BA, 5J7L|1|AA, 4U1U|1|CA, 4U25|1|AA, 4YBB|1|BA, 4V9O|1|HA, 4U1U|1|AA, 5J91|1|AA, 4U26|1|AA, 4YBB|1|AA, 4V9O|1|FA, 5J7L|1|BA, 4U1V|1|AA, 4V9P|1|BA, 4U27|1|AA, 5AFI|1|a, 4U20|1|AA, 5J91|1|BA, 4U26|1|CA, 4U1V|1|CA, 4V9P|1|FA, 4V9D|1|AA, 5IQR|1|2, 4U24|1|AA, 4V9P|1|DA, 4U27|1|CA, 4U20|1|CA, 5J5B|1|BA, 4U24|1|CA, 4V9P|1|HA, 4V9D|1|BA, 5J5B|1|AA, 4V9O|1|DA, 4U25|1|CA, 4WOI|1|DA, 4WOI|1|AA(0) (119) 4V71|1|AA, 4V50|1|AA, 3DG4|1|A, 4V5Y|1|CA, 4V56|1|CA, 3JBV|1|A, 4V47|1|BA, 4V7T|1|AA, 5J8A|1|AA, 4V6O|1|AA, 4V55|1|AA, 5JU8|1|AA, 4V79|1|AA, 3J9Z|1|SA, 4V9C|1|AA, 5IT8|1|BA, 4V6Z|1|AA, 4V4V|1|AA, 4V5H|1|AA, 3J29|1|N, 4V74|1|AA, 4V7V|1|CA, 4V65|1|A1, 4V6T|1|AA, 4V6M|1|AA, 4V54|1|AA, 5JC9|1|BA, 3J2H|1|N, 4V7C|1|AA, 4V6E|1|CA, 4V52|1|CA, 3DG5|1|A, 4V72|1|AA, 4V7U|1|CA, 4V64|1|AA, 4V48|1|BA, 3DG0|1|A, 4V7A|1|AA, 4V55|1|CA, 4V6D|1|CA, 3JA1|1|SA, 5J88|1|AA, 4V50|1|CA, 4V77|1|AA, 4V6C|1|AA, 3J2A|1|N, 4ADV|1|A, 4V85|1|AA, 4V6V|1|AA, 4V4Q|1|AA, 5L3P|1|a, 4V5B|1|BA, 3JCJ|1|g, 4V6K|1|BA, 4V75|1|AA, 4V53|1|AA, 5J8A|1|BA, 3J2F|1|N, 4WF1|1|CA, 4V4H|1|AA, 4V57|1|AA, 3DG2|1|A, 4V7T|1|CA, 4V5Y|1|AA, 4V6P|1|AA, 5J88|1|BA, 4V78|1|AA, 4V6C|1|CA, 3J9Y|1|a, 4V4W|1|AA, 5IT8|1|AA, 4V66|1|A1, 4V6Y|1|AA, 4V5B|1|DA, 3JCN|1|a, 4V7V|1|AA, 4V6N|1|BA, 5JTE|1|AA, 4V6S|1|BA, 4V7D|1|BA, 3JCD|1|a, 4V53|1|CA, 3J2G|1|N, 4WWW|1|QA, 4V6E|1|AA, 4V73|1|AA, 4V52|1|AA, 3J2D|1|N, 4V64|1|CA, 4V9C|1|CA, 4V7U|1|AA, 4V6Q|1|AA, 4V70|1|AA, 4V56|1|AA, 2YKR|1|

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_56726.15NR_3.0_56726.162.95(36) 4U1U|1|AA, 4V9O|1|HA, 4V9P|1|BA, 4V9P|1|DA, 4V9P|1|FA, 4V9P|1|HA, 4WOI|1|AA, 4WOI|1|DA, 4YBB|1|AA, 4YBB|1|BA, 5AFI|1|a, 5IQR|1|2, 5J5B|1|AA, 5J5B|1|BA, 5J7L|1|AA, 5J7L|1|BA, 5J91|1|AA, 4V9O|1|FA, 4V9O|1|DA, 4U1U|1|CA, 4U1V|1|AA, 4U1V|1|CA, 4U20|1|AA, 4U20|1|CA, 4U24|1|AA, 4U24|1|CA, 4U25|1|AA, 4U25|1|CA, 4U26|1|AA, 4U26|1|CA, 4U27|1|AA, 4U27|1|CA, 4V9D|1|AA, 4V9D|1|BA, 4V9O|1|BA, 5J91|1|BA(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V9P|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
24V9P|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
34V9O|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
44V9P|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
54V9P|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
64V9O|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
74U1U|1|AACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951538
84U20|1|AACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91538
94U1V|1|AACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31538
104U27|1|AACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81538
114U25|1|AACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91538
124U26|1|AACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81538
134U24|1|AACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91538
144YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11523
155J91|1|AAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961523
165J5B|1|AAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81523
175J7L|1|AAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31523
185J7L|1|BAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31522
195J91|1|BAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961522
205J5B|1|BAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81522
214YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11522
224U24|1|CACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91539
234U26|1|CACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81539
244U25|1|CACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91539
254U27|1|CACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81539
264U1V|1|CACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31539
274U20|1|CACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91539
284U1U|1|CACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951539
294V9O|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
304V9O|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
314V9D|1|AAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
324WOI|1|AA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31538
335AFI|1|a2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.91528
344WOI|1|DA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31539
354V9D|1|BAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
365IQR|1|2Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY31522
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