NR_3.0_56726.88

Members (99)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|AA (rep)	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	4YBB\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	4WOI\|1\|DA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
4	4WOI\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA, Messenger RNA	Escherichia coli	Bacteria	RF00177	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
5	4V9P\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
6	4V9O\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
7	5J7L\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
8	4V9P\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
9	4V9P\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
10	4V9P\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
11	4V9O\|1\|FA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
12	5J91\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
13	6I7V\|1\|AA	Small subunit ribosomal RNA	16S ribosmal RNA	Escherichia coli	Bacteria	RF00177	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
14	4V9O\|1\|DA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
15	4U27\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
16	4YBB\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
17	4U1U\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
18	4U26\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
19	4V9D\|1\|AA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
20	6I7V\|1\|BA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
21	4U24\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
22	4U25\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
23	4V9D\|1\|BA	Small subunit ribosomal RNA	16S rRNA, messenger RNA	Escherichia coli	Bacteria	RF00177	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
24	4U27\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
25	4V9O\|1\|HA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
26	4U20\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
27	4U1U\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
28	4U1V\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
29	4U25\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
30	4U26\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
31	5J91\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
32	4U24\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
33	4U1V\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
34	4U20\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
35	5J5B\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
36	5J5B\|1\|BA	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
37	7K00\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2020-09-23
38	7S1H\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2021-11-17
39	7N1P\|1\|16	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2021-07-14
40	7S1K\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2022-01-19
41	7S1J\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli ribosome with antibiotic radezolid	Electron microscopy	2.47	2022-03-02
42	7S1I\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.48	2022-03-02
43	7S1G\|1\|C	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2021-11-17
44	7O1A\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2021-09-01
45	7N2U\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	Electron microscopy	2.53	2021-07-14
46	7N2V\|1\|16	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	Electron microscopy	2.54	2021-07-14
47	7SA4\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Damaged 70S ribosome with PrfH bound	Electron microscopy	2.55	2022-08-03
48	6YSS\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	Electron microscopy	2.6	2020-08-19
49	7UG7\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B	Electron microscopy	2.58	2022-05-18
50	6XZB\|1\|A1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.54	2020-11-04
51	7NWT\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	Electron microscopy	2.66	2021-12-15
52	7N30\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	Electron microscopy	2.66	2021-07-14
53	7N31\|1\|16	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a post-translocation (POST) conformation	Electron microscopy	2.69	2021-07-14
54	6TC3\|1\|16S1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	Electron microscopy	2.7	2020-01-01
55	6TBV\|1\|16S1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	Electron microscopy	2.7	2020-01-01
56	7N2C\|1\|16	Small subunit ribosomal RNA	16S rRNA, Chains: mR	Escherichia coli K-12	Bacteria	RF00177	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	Electron microscopy	2.72	2021-07-14
57	6XZA\|1\|A1	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.66	2020-11-04
58	6Y69\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	Electron microscopy	2.86	2020-07-01
59	7O1C\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	Electron microscopy	2.6	2021-09-01
60	7NSO\|1\|a	Small subunit ribosomal RNA	16S rRNA (1540-MER)	Escherichia coli	Bacteria	RF00177	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	Electron microscopy	2.9	2021-07-14
61	7ST2\|1\|3	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	Electron microscopy	2.9	2022-02-23
62	5AFI\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
63	7BOH\|1\|A	Small subunit ribosomal RNA	RNA (1527-MER)	Escherichia coli K-12	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)	Electron microscopy	2.82	2021-12-08
64	7OT5\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-70 cotranslational folding intermediate 1	Electron microscopy	2.9	2022-01-19
65	7OTC\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli BL21(DE3)	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B	Electron microscopy	2.9	2022-05-11
66	7B5K\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	Electron microscopy	2.9	2021-05-26
67	5NWY\|1\|0	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
68	7OIZ\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	Electron microscopy	2.9	2021-09-15
69	7P3K\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	Electron microscopy	2.9	2021-10-27
70	7ST6\|1\|3	Small subunit ribosomal RNA	16S rRNA, mRNA	Escherichia coli K-12	Bacteria	RF00177	Pre translocation, non-rotated 70S ribosome (Structure I)	Electron microscopy	3	2022-02-23
71	6WD0\|1\|3	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	Electron microscopy	3	2020-07-01
72	7TOS\|1\|16S	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20	Electron microscopy	2.9	2022-05-25
73	6H4N\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	2018-09-05
74	6WDE\|1\|3	Small subunit ribosomal RNA	16S ribosomal RNA, mRNA	Escherichia coli	Bacteria	RF00177	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	Electron microscopy	3	2020-07-01
75	6ORE\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Release complex 70S	Electron microscopy	2.9	2019-06-19
76	5WDT\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
77	5WFS\|1\|a	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
78	7O19\|1\|AA	Small subunit ribosomal RNA	Ribosomal RNA 16S	Escherichia coli K-12	Bacteria	RF00177	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.9	2021-09-01
79	7OIF\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-27 cotranslational folding intermediate 2	Electron microscopy	3	2022-01-19
80	7OII\|1\|2	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	CspA-70 cotranslational folding intermediate 2	Electron microscopy	3	2022-01-19
81	7BOE\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)	Electron microscopy	2.9	2021-12-08
82	5MDV\|1\|2	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
83	7NAX\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)	Electron microscopy	2.96	2021-12-08
84	6ZTP\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 6	Electron microscopy	3	2020-09-16
85	6ZU1\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 2	Electron microscopy	3	2020-09-16
86	6ZTO\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	E. coli 70S-RNAP expressome complex in uncoupled state 1	Electron microscopy	3	2020-09-23
87	7NAR\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)	Electron microscopy	3	2021-12-08
88	7OE0\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	E. coli pre-30S delta rbfA ribosomal subunit class F	Electron microscopy	2.69	2021-07-14
89	5IQR\|1\|2	Small subunit ribosomal RNA	SSU rRNA	Escherichia coli	Bacteria	RF00177	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04
90	7BOG\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state E (body domain)	Electron microscopy	2.75	2021-07-07
91	7BOD\|1\|A	Small subunit ribosomal RNA	16S rRNA (body domain of 30S subunit)	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (body domain)	Electron microscopy	2.88	2021-07-07
92	7BOF\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state I (body domain)	Electron microscopy	2.92	2021-07-07
93	7BOI\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli K-12	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)	Electron microscopy	2.98	2021-07-07
94	7PJS\|1\|a	Small subunit ribosomal RNA	16S ribosomal RNA	Escherichia coli	Bacteria	RF00177	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2021-10-20
95	7OI0\|1\|A	Small subunit ribosomal RNA	16S rRNA	Escherichia coli BW25113	Bacteria	RF00177	E.coli delta rbfA pre-30S ribosomal subunit class D	Electron microscopy	2.76	2021-07-14
96	7AF8\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state E (head domain)	Electron microscopy	2.75	2021-07-07
97	7AF3\|1\|1	Small subunit ribosomal RNA	16S rRNA (head)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state M (head domain)	Electron microscopy	2.82	2021-07-07
98	7AF5\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state I (head domain)	Electron microscopy	2.96	2021-07-07
99	7AFA\|1\|1	Small subunit ribosomal RNA	16SrRNA (head domain of the 30S ribosome)	Escherichia coli	Bacteria	RF00177	Bacterial 30S ribosomal subunit assembly complex state F (head domain)	Electron microscopy	2.95	2021-07-07

Release history

Release	3.242	3.243	3.244	3.245	3.246	3.247	3.248	3.249	3.250	3.251	3.252
Date	2022-08-03	2022-08-10	2022-08-17	2022-08-24	2022-08-31	2022-09-07	2022-09-14	2022-09-21	2022-09-28	2022-10-05	2022-10-12

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_56726.88	NR_3.0_56726.87	3.242	(98) 7N31\|1\|16, 4U25\|1\|AA, 6H4N\|1\|a, 7N30\|1\|16, 4U24\|1\|CA, 5WFS\|1\|a, 7N2V\|1\|16, 4U24\|1\|AA, 5WDT\|1\|a, 7N2U\|1\|16, 4U20\|1\|CA, 5NWY\|1\|0, 7N2C\|1\|16, 4U20\|1\|AA, 5MDV\|1\|2, 7N1P\|1\|16, 4U1V\|1\|CA, 5J91\|1\|BA, 7K00\|1\|A, 4U1V\|1\|AA, 5J91\|1\|AA, 7BOI\|1\|A, 4U1U\|1\|CA, 7UG7\|1\|16, 5J7L\|1\|BA, 7BOH\|1\|A, 4U1U\|1\|AA, 7TOS\|1\|16S, 5J7L\|1\|AA, 7BOG\|1\|A, 7ST6\|1\|3, 5J5B\|1\|BA, 7BOF\|1\|A, 7ST2\|1\|3, 5J5B\|1\|AA, 7BOE\|1\|A, 7S1K\|1\|C, 5IQR\|1\|2, 7BOD\|1\|A, 7S1J\|1\|C, 5AFI\|1\|a, 7B5K\|1\|a, 7S1I\|1\|C, 4YBB\|1\|BA, 7AFA\|1\|1, 7S1H\|1\|C, 4YBB\|1\|AA, 7AF8\|1\|1, 7S1G\|1\|C, 4WOI\|1\|DA, 7AF5\|1\|1, 7PJS\|1\|a, 4WOI\|1\|AA, 7AF3\|1\|1, 7P3K\|1\|A, 4V9P\|1\|HA, 6ZU1\|1\|AA, 7OTC\|1\|a, 4V9P\|1\|FA, 6ZTP\|1\|AA, 7OT5\|1\|2, 4V9P\|1\|DA, 6ZTO\|1\|AA, 7OIZ\|1\|A, 4V9P\|1\|BA, 6YSS\|1\|a, 7OII\|1\|2, 4V9O\|1\|HA, 6Y69\|1\|a, 7OIF\|1\|2, 4V9O\|1\|FA, 6XZB\|1\|A1, 7OI0\|1\|A, 4V9O\|1\|DA, 6XZA\|1\|A1, 7OE0\|1\|A, 4V9O\|1\|BA, 6WDE\|1\|3, 7O1C\|1\|AA, 4V9D\|1\|BA, 6WD0\|1\|3, 7O1A\|1\|AA, 4V9D\|1\|AA, 6TC3\|1\|16S1, 7O19\|1\|AA, 4U27\|1\|CA, 6TBV\|1\|16S1, 7NWT\|1\|2, 4U27\|1\|AA, 6ORE\|1\|2, 7NSO\|1\|a, 4U26\|1\|CA, 7NAX\|1\|A, 4U26\|1\|AA, 6I7V\|1\|BA, 7NAR\|1\|A, 4U25\|1\|	(1) 7SA4\|1\|2	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_56726.88	NR_3.0_56726.89	3.253	(99) 7S1I\|1\|C, 4U26\|1\|CA, 4YBB\|1\|BA, 6ORE\|1\|2, 7B5K\|1\|a, 7NSO\|1\|a, 7S1H\|1\|C, 4U26\|1\|AA, 4YBB\|1\|AA, 6I7V\|1\|BA, 7AFA\|1\|1, 7NAX\|1\|A, 7S1G\|1\|C, 4U25\|1\|CA, 4WOI\|1\|DA, 6I7V\|1\|AA, 7AF8\|1\|1, 7NAR\|1\|A, 7PJS\|1\|a, 4U25\|1\|AA, 4WOI\|1\|AA, 6H4N\|1\|a, 7AF5\|1\|1, 7N31\|1\|16, 7P3K\|1\|A, 4U24\|1\|CA, 4V9P\|1\|HA, 5WFS\|1\|a, 7AF3\|1\|1, 7N30\|1\|16, 7OTC\|1\|a, 4U24\|1\|AA, 4V9P\|1\|FA, 5WDT\|1\|a, 6ZU1\|1\|AA, 7N2V\|1\|16, 7OT5\|1\|2, 4U20\|1\|CA, 4V9P\|1\|DA, 5NWY\|1\|0, 6ZTP\|1\|AA, 7N2U\|1\|16, 7OIZ\|1\|A, 4U20\|1\|AA, 4V9P\|1\|BA, 5MDV\|1\|2, 6ZTO\|1\|AA, 7N2C\|1\|16, 7OII\|1\|2, 4U1V\|1\|CA, 4V9O\|1\|HA, 5J91\|1\|BA, 6YSS\|1\|a, 7N1P\|1\|16, 4U1V\|1\|AA, 7UG7\|1\|16, 4V9O\|1\|FA, 5J91\|1\|AA, 6Y69\|1\|a, 7K00\|1\|A, 7OIF\|1\|2, 4U1U\|1\|CA, 7TOS\|1\|16S, 4V9O\|1\|DA, 5J7L\|1\|BA, 6XZB\|1\|A1, 7BOI\|1\|A, 7OI0\|1\|A, 4U1U\|1\|AA, 7ST6\|1\|3, 4V9O\|1\|BA, 5J7L\|1\|AA, 6XZA\|1\|A1, 7BOH\|1\|A, 7OE0\|1\|A, 7ST2\|1\|3, 4V9D\|1\|BA, 5J5B\|1\|BA, 6WDE\|1\|3, 7BOG\|1\|A, 7O1C\|1\|AA, 7SA4\|1\|2, 4V9D\|1\|AA, 5J5B\|1\|AA, 6WD0\|1\|3, 7BOF\|1\|A, 7O1A\|1\|AA, 7S1K\|1\|C, 4U27\|1\|CA, 5IQR\|1\|2, 6TC3\|1\|16S1, 7BOE\|1\|A, 7O19\|1\|AA, 7S1J\|1\|C, 4U27\|1\|AA, 5AFI\|1\|a, 6TBV\|1\|1	(0)	(1) 7M5D\|1\|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V9D\|1\|BA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1539
2	5IQR\|1\|2	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	1522
3	6YSS\|1\|a	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	ELECTRON MICROSCOPY	2.6	1529
4	7SA4\|1\|2	Damaged 70S ribosome with PrfH bound	ELECTRON MICROSCOPY	2.55	1522
5	5MDV\|1\|2	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	1523
6	6ORE\|1\|2	Release complex 70S	ELECTRON MICROSCOPY	2.9	1523
7	7OIF\|1\|2	CspA-27 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	1523
8	7OII\|1\|2	CspA-70 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	1523
9	7OT5\|1\|2	CspA-70 cotranslational folding intermediate 1	ELECTRON MICROSCOPY	2.9	1523
10	5NWY\|1\|0	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	1539
11	6H4N\|1\|a	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	1534
12	6Y69\|1\|a	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	ELECTRON MICROSCOPY	2.86	1539
13	7ST2\|1\|3	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	ELECTRON MICROSCOPY	2.9	1539
14	6WD0\|1\|3	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	ELECTRON MICROSCOPY	3	1539
15	7TOS\|1\|16S	E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20	ELECTRON MICROSCOPY	2.9	1532
16	7NSO\|1\|a	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	ELECTRON MICROSCOPY	2.9	1540
17	7N31\|1\|16	Elongating 70S ribosome complex in a post-translocation (POST) conformation	ELECTRON MICROSCOPY	2.69	1522
18	7S1J\|1\|C	Wild-type Escherichia coli ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.47	1540
19	7S1K\|1\|C	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	1540
20	7S1H\|1\|C	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	1540
21	7S1G\|1\|C	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	1540
22	7S1I\|1\|C	Wild-type Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.48	1540
23	7NWT\|1\|2	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	ELECTRON MICROSCOPY	2.66	1523
24	6TBV\|1\|16S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	ELECTRON MICROSCOPY	2.7	1523
25	6TC3\|1\|16S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	ELECTRON MICROSCOPY	2.7	1523
26	7O1A\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	1523
27	7O19\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.9	1523
28	7O1C\|1\|AA	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.6	1523
29	7ST6\|1\|3	Pre translocation, non-rotated 70S ribosome (Structure I)	ELECTRON MICROSCOPY	3	1539
30	7P3K\|1\|A	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	ELECTRON MICROSCOPY	2.9	1509
31	7OIZ\|1\|A	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	ELECTRON MICROSCOPY	2.9	1509
32	7B5K\|1\|a	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	ELECTRON MICROSCOPY	2.9	1522
33	4WOI\|1\|DA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1539
34	5WFS\|1\|a	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	1529
35	5WDT\|1\|a	70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	1529
36	5AFI\|1\|a	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	1528
37	6WDE\|1\|3	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	ELECTRON MICROSCOPY	3	1539
38	7K00\|1\|A	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	1508
39	6ZTO\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 1	ELECTRON MICROSCOPY	3	1522
40	6ZU1\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 2	ELECTRON MICROSCOPY	3	1522
41	6ZTP\|1\|AA	E. coli 70S-RNAP expressome complex in uncoupled state 6	ELECTRON MICROSCOPY	3	1522
42	7N1P\|1\|16	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	1531
43	6XZB\|1\|A1	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.54	1523
44	6XZA\|1\|A1	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.66	1523
45	4WOI\|1\|AA	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	1538
46	7N30\|1\|16	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	ELECTRON MICROSCOPY	2.66	1515
47	7N2U\|1\|16	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	ELECTRON MICROSCOPY	2.53	1523
48	4V9D\|1\|AA	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	1538
49	4V9O\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
50	4V9O\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
51	4U1U\|1\|CA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1539
52	4U20\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1539
53	4U1V\|1\|CA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1539
54	4U27\|1\|CA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1539
55	4U25\|1\|CA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1539
56	4U26\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1539
57	4U24\|1\|CA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1539
58	6I7V\|1\|BA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	1533
59	4YBB\|1\|BA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1522
60	5J7L\|1\|BA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1522
61	5J91\|1\|BA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1522
62	5J5B\|1\|BA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1522
63	4U1U\|1\|AA	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	1538
64	4U20\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	1538
65	4U1V\|1\|AA	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	1538
66	4U27\|1\|AA	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	1538
67	4U25\|1\|AA	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	1538
68	4U26\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	1538
69	4U24\|1\|AA	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	1538
70	6I7V\|1\|AA	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	1522
71	4YBB\|1\|AA	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	1523
72	5J91\|1\|AA	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	1523
73	5J5B\|1\|AA	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	1523
74	5J7L\|1\|AA	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	1523
75	4V9O\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
76	4V9P\|1\|DA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
77	4V9P\|1\|BA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
78	4V9O\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
79	4V9P\|1\|HA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
80	4V9P\|1\|FA	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	1533
81	7N2V\|1\|16	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	ELECTRON MICROSCOPY	2.54	1524
82	7PJS\|1\|a	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	660
83	7BOH\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)	ELECTRON MICROSCOPY	2.82	1517
84	7BOG\|1\|A	Bacterial 30S ribosomal subunit assembly complex state E (body domain)	ELECTRON MICROSCOPY	2.75	1064
85	7BOD\|1\|A	Bacterial 30S ribosomal subunit assembly complex state M (body domain)	ELECTRON MICROSCOPY	2.88	1070
86	7BOE\|1\|A	Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)	ELECTRON MICROSCOPY	2.9	1523
87	7NAR\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement)	ELECTRON MICROSCOPY	3	1523
88	7BOI\|1\|A	Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)	ELECTRON MICROSCOPY	2.98	1070
89	7UG7\|1\|16	70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B	ELECTRON MICROSCOPY	2.58	1504
90	7OTC\|1\|a	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B	ELECTRON MICROSCOPY	2.9	1523
91	7N2C\|1\|16	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	ELECTRON MICROSCOPY	2.72	1524
92	7OI0\|1\|A	E.coli delta rbfA pre-30S ribosomal subunit class D	ELECTRON MICROSCOPY	2.76	963
93	7OE0\|1\|A	E. coli pre-30S delta rbfA ribosomal subunit class F	ELECTRON MICROSCOPY	2.69	1510
94	7NAX\|1\|A	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement)	ELECTRON MICROSCOPY	2.96	1518
95	7BOF\|1\|A	Bacterial 30S ribosomal subunit assembly complex state I (body domain)	ELECTRON MICROSCOPY	2.92	1065
96	7AFA\|1\|1	Bacterial 30S ribosomal subunit assembly complex state F (head domain)	ELECTRON MICROSCOPY	2.95	453
97	7AF5\|1\|1	Bacterial 30S ribosomal subunit assembly complex state I (head domain)	ELECTRON MICROSCOPY	2.96	453
98	7AF8\|1\|1	Bacterial 30S ribosomal subunit assembly complex state E (head domain)	ELECTRON MICROSCOPY	2.75	453
99	7AF3\|1\|1	Bacterial 30S ribosomal subunit assembly complex state M (head domain)	ELECTRON MICROSCOPY	2.82	453

Equivalence class NR_3.0_56726.88 Obsolete

Release history

Parents

Children