#IFECompound(s)RNA source organismTitleMethodResolutionDate
17SOS|1|B (rep)RNA (5'-R(*AP*AP*AP*A)-3')synthetic constructLaM domain of human LARP1 in complex with AAAA RNAX-RAY DIFFRACTION1.252022-08-03
26SCE|1|Bcyclic oligoadenylatesynthetic constructStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-RAY DIFFRACTION1.832020-02-19
36XL1|1|CcA4synthetic constructcrystal structure of cA4-activated Cad1(D294N)X-RAY DIFFRACTION1.952020-12-30
46SCF|1|Icyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.552019-10-30
56SCF|1|Kcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.552019-10-30
66YUD|1|Kcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.842020-08-19
76YUD|1|Ocyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.842020-08-19
86SCF|1|Mcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.552019-10-30
96YUD|1|Pcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.842020-08-19
106SCF|1|Lcyclic oligoadenylatesynthetic constructA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.552019-10-30
116YUD|1|Mcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.842020-08-19
126YUD|1|Qcyclic tetra-adenylate (cA4)synthetic constructStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.842020-08-19
136WXQ|1|Ecyclic tetraadenylatesynthetic constructCrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-RAY DIFFRACTION2.052021-11-17
146W11|1|CcA4Saccharolobus solfataricusThe structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4)X-RAY DIFFRACTION2.462021-03-10
156O6X|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.112019-07-31
164BA2|1|R5'-R(*AP*AP*AP*AP)-3'Saccharolobus solfataricusArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-RAY DIFFRACTION2.52012-10-03
177BDV|1|Fcyclic tetra-adenylatesynthetic constructStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.022021-03-03
187BDV|1|Hcyclic tetra-adenylatesynthetic constructStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.022021-03-03
196O6X|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.112019-07-31
207DID|1|CRNA (5'-R(*AP*AP*AP*A)-3')Mycoplasma genitalium G37Mycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNAX-RAY DIFFRACTION1.92021-03-17
216O7B|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.42019-07-31
226O6V|1|CCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.352019-07-31
236WXX|1|YcA4synthetic constructcrystal structure of cA4-activated Cad1X-RAY DIFFRACTION32020-12-30
246WXX|1|XcA4synthetic constructcrystal structure of cA4-activated Cad1X-RAY DIFFRACTION32020-12-30
256R9R|1|DDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.72019-10-02
266OV0|1|ERNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82019-07-31
276OV0|1|HRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82019-07-31
286OV0|1|GRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82019-07-31
296O6V|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.352019-07-31
306OV0|1|FRNA (5'-R(*AP*AP*AP*(A23))-3')synthetic constructCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82019-07-31
316O7B|1|DCyclic RNA cA4synthetic constructCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.42019-07-31
326R9R|1|EDNA (5'-R(P*AP*AP*AP*A)-3')synthetic constructCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.72019-10-02
336O7H|1|KCyclic DNA cA4synthetic constructCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY2.92019-07-31

Release history

Release3.2423.2433.2443.2453.2463.247
Date2022-08-032022-08-102022-08-172022-08-242022-08-312022-09-07

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17DID|1|CMycoplasma genitalium RNase R in complex with ribose methylated single-stranded RNAX-RAY DIFFRACTION1.93
26O7B|1|CCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
36OV0|1|ECrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
46OV0|1|HCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.83
57BDV|1|FStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
66WXQ|1|ECrystal structure of CRISPR-associated transcription factor Csa3 complexed with cA4X-RAY DIFFRACTION2.054
76SCF|1|IA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
86SCE|1|BStructure of a Type III CRISPR defence DNA nuclease activated by cyclic oligoadenylateX-RAY DIFFRACTION1.834
96YUD|1|MStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
106YUD|1|QStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
116YUD|1|OStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
126YUD|1|PStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
136YUD|1|KStructure of Csx3/Crn3 from Archaeoglobus fulgidus in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION1.844
146O6V|1|CCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
156O6X|1|DCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
166R9R|1|DCrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.74
176O7H|1|KCryo-EM structure of Csm-crRNA-target RNA ternary complex in complex with cA4 in type III-A CRISPR-Cas systemELECTRON MICROSCOPY2.94
186O7B|1|DCrystal structure of Csm1-Csm4 cassette in complex with cA4X-RAY DIFFRACTION2.44
196O6X|1|CCrystal structure of Csm6 W14A/E337A mutant in complex with cA4 by cocrystallizationX-RAY DIFFRACTION2.114
206WXX|1|Ycrystal structure of cA4-activated Cad1X-RAY DIFFRACTION34
216WXX|1|Xcrystal structure of cA4-activated Cad1X-RAY DIFFRACTION34
226XL1|1|Ccrystal structure of cA4-activated Cad1(D294N)X-RAY DIFFRACTION1.954
237BDV|1|HStructure of Can2 from Sulfobacillus thermosulfidooxidans in complex with cyclic tetra-adenylate (cA4)X-RAY DIFFRACTION2.024
246W11|1|CThe structure of Sulfolobus solfataricus Csa3 in complex with cyclic tetraadenylate (cA4)X-RAY DIFFRACTION2.464
256SCF|1|MA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
266SCF|1|KA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
276SCF|1|LA viral anti-CRISPR subverts type III CRISPR immunity by rapid degradation of cyclic oligoadenylateX-RAY DIFFRACTION1.554
286O6V|1|DCrystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6X-RAY DIFFRACTION2.354
297SOS|1|BLaM domain of human LARP1 in complex with AAAA RNAX-RAY DIFFRACTION1.254
304BA2|1|RArchaeal exosome (Rrp4-Rrp41(D182A)-Rrp42) bound to inorganic phosphateX-RAY DIFFRACTION2.54
316R9R|1|ECrystal structure of Csx1 in complex with cyclic oligoadenylate cOA4 conformation 2X-RAY DIFFRACTION2.72
326OV0|1|GCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82
336OV0|1|FCrystal structure of Csm6 in complex with A4>p by soaking A4>p into Csm6X-RAY DIFFRACTION2.82