NR_3.0_65795.13

Members (73)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Domain	Rfam	Title	Method	Å	Date
1	1FJG\|1\|A (rep)	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN	X-ray diffraction	3	2000-09-25
2	2UUA\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.	X-ray diffraction	2.9	2007-05-15
3	1N32\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin	X-ray diffraction	3	2002-11-29
4	4B3M\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the 30S ribosome in complex with compound 1	X-ray diffraction	2.9	2013-08-07
5	2UUB\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.	X-ray diffraction	2.8	2007-05-15
6	2VQE\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-ray diffraction	2.5	2008-04-29
7	4W2I\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
8	4B3R\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the 30S ribosome in complex with compound 30	X-ray diffraction	3	2013-08-07
9	4W2I\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
10	4V9H\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-ray diffraction	2.86	2014-07-09
11	4Y4O\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
12	2VQF\|1\|A	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-ray diffraction	2.9	2008-04-29
13	4Z8C\|1\|1a	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
14	4B3T\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the 30S ribosome in complex with compound 39	X-ray diffraction	3	2013-08-07
15	4Y4O\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
16	1VY4\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
17	4W2G\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
18	4W2F\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
19	3T1Y\|1\|A	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin	X-ray diffraction	2.8	2012-01-25
20	2UXC\|1\|A	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.	X-ray diffraction	2.9	2007-05-08
21	1VY5\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
22	4W2E\|1\|a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2014-10-01
23	4W2F\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
24	4WPO\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
25	4Z3S\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
26	1VY5\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
27	4W2G\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
28	4WPO\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
29	4Y4P\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
30	1XMQ\|1\|A	Small subunit ribosomal RNA	16s ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center	X-ray diffraction	3	2004-12-14
31	4V8I\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
32	4Z8C\|1\|2a	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-ray diffraction	2.9	2015-05-20
33	4LNT\|1\|QA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
34	4V67\|1\|AA	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
35	4Z3S\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
36	4W2H\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
37	4W2H\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
38	4V8D\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
39	4V67\|1\|CA	Small subunit ribosomal RNA	16S RRNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
40	4V8I\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
41	4WQY\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
42	4LNT\|1\|XA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
43	4V9R\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
44	4Y4P\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
45	1VY4\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
46	1VY6\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
47	4WQF\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
48	4V8B\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
49	1VY7\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
50	4WQU\|1\|BA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
51	4V8D\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
52	4V9R\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
53	1VY6\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
54	1VY7\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
55	4V8B\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
56	4WQY\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-ray diffraction	2.8	2015-01-28
57	4WQF\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
58	4V90\|1\|AA	Small subunit ribosomal RNA	16S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00177	Thermus thermophilus Ribosome	X-ray diffraction	2.95	2014-07-09
59	4V51\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
60	4WQU\|1\|DA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
61	4V51\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
62	4WSD\|1\|13	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
63	4WSD\|1\|1G	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
64	4V8G\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
65	4V7W\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
66	4V7W\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
67	4V7X\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
68	4V7X\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
69	4V7Y\|1\|CA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
70	4V7Y\|1\|AA	Small subunit ribosomal RNA	16S rRNA	Thermus thermophilus	Bacteria	RF00177	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
71	4V8G\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
72	4V7L\|1\|CA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
73	4V7L\|1\|AA	Small subunit ribosomal RNA	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09

Release history

Release	2.50	2.51	2.52	2.53	2.54	2.55
Date	2015-11-20	2015-11-27	2015-12-04	2015-12-11	2015-12-18	2015-12-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_65795.13	NR_all_65795.12	2.50	(73) 4V7X\|1\|AA, 4Z3S\|1\|1a, 4V8G\|1\|AA, 4W2H\|1\|AA, 4B3T\|1\|A, 4WQF\|1\|DA, 4V7L\|1\|AA, 4Y4O\|1\|1a, 1VY7\|1\|AA, 4V8B\|1\|AA, 4W2F\|1\|AA, 2VQF\|1\|A, 4W2I\|1\|CA, 4V51\|1\|CA, 4WQY\|1\|BA, 1VY5\|1\|AA, 4V9H\|1\|AA, 2UUA\|1\|A, 4W2G\|1\|CA, 4V8G\|1\|CA, 1VY6\|1\|CA, 4W2E\|1\|a, 4V7W\|1\|AA, 4Y4O\|1\|2a, 4V8B\|1\|CA, 1FJG\|1\|A, 4V90\|1\|AA, 4V67\|1\|AA, 4WSD\|1\|13, 4V7X\|1\|CA, 4Z3S\|1\|2a, 4LNT\|1\|QA, 4WQU\|1\|BA, 4V7L\|1\|CA, 1VY7\|1\|CA, 3T1Y\|1\|A, 4WPO\|1\|BA, 4WQY\|1\|DA, 1VY5\|1\|CA, 4V9R\|1\|AA, 2UUB\|1\|A, 4V8I\|1\|AA, 4Y4P\|1\|1a, 4V8D\|1\|AA, 1N32\|1\|A, 4V67\|1\|CA, 4V7Y\|1\|AA, 4Z8C\|1\|1a, 4LNT\|1\|XA, 4WQU\|1\|DA, 4B3M\|1\|A, 4WPO\|1\|DA, 1VY6\|1\|AA, 2UXC\|1\|A, 4W2H\|1\|CA, 1VY4\|1\|AA, 4V8I\|1\|CA, 4W2F\|1\|CA, 4V8D\|1\|CA, 4WSD\|1\|1G, 4V7Y\|1\|CA, 4Z8C\|1\|2a, 4V7W\|1\|CA, 4Y4P\|1\|2a, 4B3R\|1\|A, 4V9R\|1\|CA, 2VQE\|1\|A, 4W2I\|1\|AA, 1XMQ\|1\|A, 4W2G\|1\|AA, 4V51\|1\|AA, 4WQF\|1\|BA, 1VY4\|1\|CA	(0)	(252) 4V9Q\|1\|DA, 4V8C\|1\|DA, 4GKK\|1\|A, 1IBL\|1\|A, 4V63\|1\|AA, 4TUE\|1\|XA, 4XEJ\|1\|B16S, 4V9K\|1\|CA, 4LF7\|1\|A, 4LFZ\|1\|QA, 4DR5\|1\|A, 4V8E\|1\|DA, 4V5P\|1\|AA, 1N36\|1\|A, 4WT8\|1\|Bb, 4V4I\|1\|y, 4L47\|1\|XA, 4V9L\|1\|CA, 4V84\|1\|CA, 4DV3\|1\|A, 4TUB\|1\|XA, 4WU1\|1\|1G, 4V9B\|1\|CA, 4AQY\|1\|A, 5A9Z\|1\|BA, 4V5J\|1\|CA, 4V5Q\|1\|AA, 1J5E\|1\|A, 4WRO\|1\|1G, 4JV5\|1\|A, 2HHH\|1\|A, 4V7P\|1\|DA, 4V5D\|1\|CA, 1HR0\|1\|A, 4P6F\|1\|XA, 4JI1\|1\|A, 4V95\|1\|CA, 4V6G\|1\|CA, 2UUC\|1\|A, 4YPB\|1\|QA, 4DR7\|1\|A, 4V5E\|1\|CA, 4LSK\|1\|QA, 4WQR\|1\|1G, 4V8N\|1\|CA, 4JI3\|1\|A, 1VVJ\|1\|XA, 4V7J\|1\|Ba, 4V4Z\|1\|AA, 5D8B\|1\|UC, 4V9S\|1\|CA, 4DV5\|1\|A, 4V8Q\|1\|BA, 4V68\|1\|AA, 4WZD\|1\|1G, 4V9I\|1\|CA, 4LF9\|1\|A, 4LT8\|1\|QA, 4W29\|1\|CA, 4V8F\|1\|CA, 1JGP\|1\|A, 4WSM\|1\|1G, 4V4P\|1\|BA+4V4P\|1\|B1, 4L71\|1\|XA, 4V9M\|1\|CA, 4DUZ\|1\|A, 1I95\|1\|A, 4V5R\|1\|AA, 4TUC\|1\|XA, 4YZV\|1\|QA, 4LEL\|1\|XA, 4DR1\|1\|A, 4V8A\|1\|DA, 4V5K\|1\|CA, 1I97\|1\|A, 4WR6\|1\|1G, 4TUD\|1\|XA, 4K0K\|1\|A, 4V9J\|1\|CA, 4V7Z\|1\|CA, 4DR3\|1\|A, 1FKA\|1\|A, 4V5M\|1\|AA, 4P70\|1\|XA, 4WT1\|1\|1G, 4V97\|1\|CA, 2UXD\|1\|A, 4V83\|1\|CA, 4V5F\|1\|CA, 4W4G\|1\|XA, 4V8H\|1\|CA, 4JI5\|1\|A, 1XNQ\|1\|A, 4V9A\|1\|CA, 4V7K\|1\|

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V8G\|1\|AA	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1505
2	4V90\|1\|AA	Thermus thermophilus Ribosome	X-RAY DIFFRACTION	2.95	1507
3	4V9H\|1\|AA	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-RAY DIFFRACTION	2.86	1514
4	4W2E\|1\|a	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	1496
5	4V67\|1\|CA	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	1504
6	4V67\|1\|AA	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	1504
7	4V8G\|1\|CA	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1501
8	4V7Y\|1\|CA	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	1504
9	4V7W\|1\|CA	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	1504
10	4V7X\|1\|CA	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	1504
11	4V7Y\|1\|AA	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	1504
12	4V7W\|1\|AA	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	1504
13	4V7X\|1\|AA	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	1504
14	4V51\|1\|AA	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	1504
15	4V51\|1\|CA	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	1504
16	4V7L\|1\|AA	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1495
17	4V7L\|1\|CA	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	1495
18	4W2I\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	1503
19	4W2G\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	1503
20	4W2F\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1503
21	4Z3S\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	1491
22	4Y4P\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1491
23	4WPO\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	1503
24	4WQY\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	1501
25	4WQF\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	1501
26	4WQU\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	1501
27	1VY4\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	1503
28	1VY5\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	1503
29	1VY6\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	1503
30	4W2H\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	1503
31	4Z8C\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	1483
32	4V9R\|1\|CA	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	1503
33	1VY7\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	1503
34	4Y4O\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1492
35	4V8I\|1\|CA	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	1491
36	4WQY\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)	X-RAY DIFFRACTION	2.8	1495
37	4WQF\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	1495
38	4WQU\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	1495
39	4WPO\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	1497
40	4Z8C\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin	X-RAY DIFFRACTION	2.9	1477
41	4V9R\|1\|AA	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	1498
42	4W2H\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	1497
43	4W2I\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	1496
44	1VY7\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	1498
45	1VY6\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	1498
46	1VY4\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	1497
47	1VY5\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	1498
48	4W2G\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	1498
49	4W2F\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1497
50	4Y4P\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1488
51	4Z3S\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	1488
52	4Y4O\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1488
53	4V8I\|1\|AA	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	1493
54	4WSD\|1\|13	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	1498
55	4V8D\|1\|AA	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	1502
56	4V8B\|1\|AA	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	1506
57	4LNT\|1\|XA	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	1500
58	4LNT\|1\|QA	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	1500
59	4V8D\|1\|CA	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	1502
60	4V8B\|1\|CA	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	1506
61	4WSD\|1\|1G	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	1498
62	3T1Y\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin	X-RAY DIFFRACTION	2.8	1513
63	1FJG\|1\|A	STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN	X-RAY DIFFRACTION	3	1507
64	2VQF\|1\|A	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-RAY DIFFRACTION	2.9	1513
65	2VQE\|1\|A	Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding	X-RAY DIFFRACTION	2.5	1513
66	2UUA\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.	X-RAY DIFFRACTION	2.9	1512
67	2UUB\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.	X-RAY DIFFRACTION	2.8	1512
68	4B3T\|1\|A	Crystal structure of the 30S ribosome in complex with compound 39	X-RAY DIFFRACTION	3	1512
69	4B3M\|1\|A	Crystal structure of the 30S ribosome in complex with compound 1	X-RAY DIFFRACTION	2.9	1512
70	4B3R\|1\|A	Crystal structure of the 30S ribosome in complex with compound 30	X-RAY DIFFRACTION	3	1512
71	1N32\|1\|A	Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin	X-RAY DIFFRACTION	3	1513
72	2UXC\|1\|A	Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.	X-RAY DIFFRACTION	2.9	1513
73	1XMQ\|1\|A	Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center	X-RAY DIFFRACTION	3	1507

Equivalence class NR_3.0_65795.13 Obsolete

Release history

Parents

Children