BGSU RNA Site //

Equivalence class NR_3.0_70532.1 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
12OEU|1|A (rep)Hammerhead Ribozyme, 5'-R(*GP*GP*CP*GP*UP*(OMC)P*CP*UP*GP*GP*(5BU)P*AP*UP*CP*CP*AP*AP*UP*CP*(DC))-3'Full-length hammerhead ribozyme with Mn(II) boundX-RAY DIFFRACTION22007-02-20
23ZP8|1|AHAMMERHEAD RIBOZYME, ENZYME STRANDsynthetic constructSyntheticHIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION1.552013-03-06
33ZD4|1|AHAMMERHEAD RIBOZYME, ENZYME STRANDsynthetic constructSyntheticFull-Length Hammerhead Ribozyme with G12A substitution at the general base positionX-RAY DIFFRACTION2.22012-12-12
43ZD5|1|AHAMMERHEAD RIBOZYME, ENZYME STRANDsynthetic constructSyntheticTHE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION2.22012-12-12
53ZD3|1|AHAMMERHEAD RIBOZYME, ENZYME STRAND, HAMMERHEAD RIBOZYME, SUBTRATE STRANDHigh-resolution full-length hammerhead ribozyme in the presence of Mg ion.X-RAY DIFFRACTION1.552012-12-12
62GOZ|1|ARibozyme, 5'-R(*GP*GP*CP*GP*UP*(OMC)P*CP*UP*GP*GP*(5BU)P*AP*UP*CP*CP*AP*AP*(5BU)P*CP*(DC))-3'The 2.2 A structure of a full-length catalytically active hammerhead ribozymeX-RAY DIFFRACTION2.22006-07-18

Release history

Release3.51
Date2018-12-07

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_70532.1NR_3.0_57996.13.51(3) 2GOZ|1|A, 3ZD3|1|A, 2OEU|1|A(3) 3ZP8|1|A, 3ZD5|1|A, 3ZD4|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_70532.1NR_3.0_42484.13.52(3) 2GOZ|1|A, 2OEU|1|A, 3ZD3|1|A(3) 3ZD4|1|A, 3ZP8|1|A, 3ZD5|1|A(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13ZD4|1|AFull-Length Hammerhead Ribozyme with G12A substitution at the general base positionX-RAY DIFFRACTION2.242
23ZP8|1|AHIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION1.5542
33ZD3|1|AHigh-resolution full-length hammerhead ribozyme in the presence of Mg ion.X-RAY DIFFRACTION1.5542
42OEU|1|AFull-length hammerhead ribozyme with Mn(II) boundX-RAY DIFFRACTION242
53ZD5|1|ATHE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYMEX-RAY DIFFRACTION2.242
62GOZ|1|AThe 2.2 A structure of a full-length catalytically active hammerhead ribozymeX-RAY DIFFRACTION2.242