Equivalence class NR_3.0_83717.42 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 5J7L|1|DA (rep) | 23S rRNA | Escherichia coli | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 2016-07-27 |
| 2 | 4YBB|1|DA | 23S rRNA | Escherichia coli | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 2015-03-18 |
| 3 | 4WOI|1|BA | 23S ribosomal RNA | Escherichia coli | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 2015-08-05 |
| 4 | 4WOI|1|CA | 23S ribosomal RNA | Escherichia coli | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 2015-08-05 |
| 5 | 6I7V|1|DA | 23S ribosomal RNA | Escherichia coli | Ribosomal protein paralogs bL31 and bL36 | X-RAY DIFFRACTION | 2.9 | 2018-12-05 |
| 6 | 5J91|1|DA | 23S rRNA | Escherichia coli | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 2016-07-06 |
| 7 | 4V9P|1|EA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 8 | 4V9P|1|CA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 9 | 4V9P|1|GA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 10 | 4V9P|1|AA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 11 | 4V9D|1|CA | 23S rRNA | Escherichia coli | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 12 | 4V9O|1|AA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 13 | 4V9O|1|EA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 14 | 4V9O|1|CA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 15 | 5J7L|1|CA | 23S rRNA | Escherichia coli | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 2016-07-27 |
| 16 | 4U27|1|BA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 17 | 4U24|1|BA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 18 | 4U25|1|BA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 19 | 4V9D|1|DA | 23S rRNA | Escherichia coli | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 20 | 4U26|1|BA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 21 | 4V9O|1|GA | 23S rRNA | Escherichia coli | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2014-07-09 |
| 22 | 4U1U|1|BA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 2014-07-30 |
| 23 | 4YBB|1|CA | 23S rRNA | Escherichia coli | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 2015-03-18 |
| 24 | 4U1V|1|BA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 2014-07-30 |
| 25 | 4U20|1|BA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 26 | 6I7V|1|CA | 23S ribsomal RNA | Escherichia coli | Ribosomal protein paralogs bL31 and bL36 | X-RAY DIFFRACTION | 2.9 | 2018-12-05 |
| 27 | 4U27|1|DA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 28 | 4U25|1|DA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 29 | 4U1U|1|DA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 2014-07-30 |
| 30 | 4U1V|1|DA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 2014-07-30 |
| 31 | 4U24|1|DA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 32 | 4U26|1|DA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 2014-07-30 |
| 33 | 4U20|1|DA | 23S rRNA | Escherichia coli | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 2014-07-30 |
| 34 | 5J91|1|CA | 23S rRNA | Escherichia coli | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 2016-07-06 |
| 35 | 5J5B|1|DA | 23S rRNA | Escherichia coli | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 2016-07-27 |
| 36 | 5J5B|1|CA | 23S rRNA | Escherichia coli | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 2016-07-27 |
| 37 | 6HRM|1|1 | stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA | Escherichia coli | E. coli 70S d2d8 stapled ribosome | ELECTRON MICROSCOPY | 2.96 | 2018-12-19 |
| 38 | 5AFI|1|A | 23S ribosomal RNA | Escherichia coli | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 2015-03-11 |
| 39 | 5NWY|1|N | 23S rRNA | Escherichia coli | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 2017-07-19 |
| 40 | 5MDV|1|1 | 23S ribosomal RNA | Escherichia coli | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 2016-12-14 |
| 41 | 6H4N|1|A | 23S ribosomal RNA | Escherichia coli | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome | ELECTRON MICROSCOPY | 3 | 2018-09-05 |
| 42 | 5WFS|1|A | 23S rRNA | Escherichia coli | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | ELECTRON MICROSCOPY | 3 | 2018-05-02 |
| 43 | 5WDT|1|A | 23S rRNA | Escherichia coli | 70S ribosome-EF-Tu H84A complex with GppNHp | ELECTRON MICROSCOPY | 3 | 2018-04-25 |
| 44 | 5IQR|1|1 | LSU rRNA | Escherichia coli | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 2016-05-04 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_83717.42 | NR_3.0_83717.41 | 3.53 | (43) 4U24|1|BA, 5WDT|1|A, 4U20|1|DA, 5NWY|1|N, 4U20|1|BA, 5MDV|1|1, 4U1V|1|DA, 5J91|1|DA, 4U1V|1|BA, 5J91|1|CA, 4U1U|1|DA, 5J7L|1|DA, 4U1U|1|BA, 5J7L|1|CA, 5J5B|1|DA, 5J5B|1|CA, 5IQR|1|1, 5AFI|1|A, 4YBB|1|DA, 4YBB|1|CA, 4WOI|1|CA, 4WOI|1|BA, 4V9P|1|GA, 4V9P|1|EA, 4V9P|1|CA, 4V9P|1|AA, 4V9O|1|GA, 4V9O|1|EA, 4V9O|1|CA, 4V9O|1|AA, 4V9D|1|DA, 4V9D|1|CA, 4U27|1|DA, 4U27|1|BA, 4U26|1|DA, 4U26|1|BA, 6I7V|1|DA, 4U25|1|DA, 6I7V|1|CA, 4U25|1|BA, 6H4N|1|A, 4U24|1|DA, 5WFS|1|A | (1) 6HRM|1|1 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_83717.42 | NR_3.0_83717.43 | 3.63 | (44) 6I7V|1|DA, 5J5B|1|DA, 5J5B|1|CA, 5IQR|1|1, 5AFI|1|A, 4YBB|1|DA, 4YBB|1|CA, 4WOI|1|CA, 4WOI|1|BA, 4V9P|1|GA, 5J7L|1|CA, 5J7L|1|DA, 6I7V|1|CA, 6HRM|1|1, 6H4N|1|A, 5WFS|1|A, 5WDT|1|A, 5NWY|1|N, 5MDV|1|1, 5J91|1|DA, 5J91|1|CA, 4V9P|1|EA, 4V9P|1|CA, 4U25|1|DA, 4U25|1|BA, 4U24|1|DA, 4U24|1|BA, 4U20|1|DA, 4U20|1|BA, 4U1V|1|DA, 4U1V|1|BA, 4U1U|1|DA, 4U26|1|BA, 4U26|1|DA, 4V9P|1|AA, 4V9O|1|GA, 4V9O|1|EA, 4V9O|1|CA, 4V9O|1|AA, 4V9D|1|DA, 4V9D|1|CA, 4U27|1|DA, 4U27|1|BA, 4U1U|1|BA | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4WOI|1|BA | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 2897 |
| 2 | 4V9D|1|CA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2897 |
| 3 | 4U1U|1|BA | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 2897 |
| 4 | 4U20|1|BA | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 2897 |
| 5 | 4U1V|1|BA | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 2897 |
| 6 | 4U27|1|BA | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 2897 |
| 7 | 4U25|1|BA | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 2897 |
| 8 | 4U26|1|BA | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 2897 |
| 9 | 4U24|1|BA | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 2897 |
| 10 | 5IQR|1|1 | Structure of RelA bound to the 70S ribosome | ELECTRON MICROSCOPY | 3 | 2882 |
| 11 | 5MDV|1|1 | Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state) | ELECTRON MICROSCOPY | 2.97 | 2881 |
| 12 | 5NWY|1|N | 2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex | ELECTRON MICROSCOPY | 2.9 | 2898 |
| 13 | 6H4N|1|A | Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome | ELECTRON MICROSCOPY | 3 | 2900 |
| 14 | 5AFI|1|A | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 2876 |
| 15 | 5WFS|1|A | 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4) | ELECTRON MICROSCOPY | 3 | 2876 |
| 16 | 5WDT|1|A | 70S ribosome-EF-Tu H84A complex with GppNHp | ELECTRON MICROSCOPY | 3 | 2876 |
| 17 | 4V9P|1|CA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 18 | 4V9O|1|CA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 19 | 4V9O|1|AA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 20 | 4V9P|1|AA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 21 | 4V9P|1|EA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 22 | 4V9O|1|EA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 23 | 4V9O|1|GA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 24 | 4V9P|1|GA | Control of ribosomal subunit rotation by elongation factor G | X-RAY DIFFRACTION | 2.9 | 2854 |
| 25 | 4WOI|1|CA | 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2 | X-RAY DIFFRACTION | 3 | 2897 |
| 26 | 4V9D|1|DA | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 2896 |
| 27 | 4U1U|1|DA | Crystal structure of the E. coli ribosome bound to quinupristin. | X-RAY DIFFRACTION | 2.95 | 2897 |
| 28 | 4U20|1|DA | Crystal structure of the E. coli ribosome bound to flopristin. | X-RAY DIFFRACTION | 2.9 | 2897 |
| 29 | 4U1V|1|DA | Crystal structure of the E. coli ribosome bound to linopristin. | X-RAY DIFFRACTION | 3 | 2897 |
| 30 | 4U27|1|DA | Crystal structure of the E. coli ribosome bound to flopristin and linopristin. | X-RAY DIFFRACTION | 2.8 | 2897 |
| 31 | 4U25|1|DA | Crystal structure of the E. coli ribosome bound to virginiamycin M1. | X-RAY DIFFRACTION | 2.9 | 2897 |
| 32 | 4U26|1|DA | Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin. | X-RAY DIFFRACTION | 2.8 | 2897 |
| 33 | 4U24|1|DA | Crystal structure of the E. coli ribosome bound to dalfopristin. | X-RAY DIFFRACTION | 2.9 | 2897 |
| 34 | 6I7V|1|CA | Ribosomal protein paralogs bL31 and bL36 | X-RAY DIFFRACTION | 2.9 | 2898 |
| 35 | 4YBB|1|CA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 2876 |
| 36 | 5J5B|1|CA | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 2876 |
| 37 | 5J91|1|CA | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 2876 |
| 38 | 5J7L|1|CA | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 2875 |
| 39 | 6I7V|1|DA | Ribosomal protein paralogs bL31 and bL36 | X-RAY DIFFRACTION | 2.9 | 2875 |
| 40 | 5J7L|1|DA | Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline | X-RAY DIFFRACTION | 3 | 2886 |
| 41 | 5J91|1|DA | Structure of the Wild-type 70S E coli ribosome bound to Tigecycline | X-RAY DIFFRACTION | 2.96 | 2886 |
| 42 | 5J5B|1|DA | Structure of the WT E coli ribosome bound to tetracycline | X-RAY DIFFRACTION | 2.8 | 2886 |
| 43 | 4YBB|1|DA | High-resolution structure of the Escherichia coli ribosome | X-RAY DIFFRACTION | 2.1 | 2883 |
| 44 | 6HRM|1|1 | E. coli 70S d2d8 stapled ribosome | ELECTRON MICROSCOPY | 2.96 | 4417 |