NR_3.0_97519.1

Members (43)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Domain	Rfam	Title	Method	Å	Date
1	1VY4\|1\|BA (rep)	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
2	4V8I\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
3	4V9R\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
4	4W2H\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
5	4W2F\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
6	4W2G\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
7	4W2I\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
8	4V8I\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of YfiA bound to the 70S ribosome.	X-ray diffraction	2.7	2014-07-09
9	4V9R\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
10	1VY5\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
11	1VY4\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
12	1VY7\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA, Cytidine-Puromycin	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
13	4W2H\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
14	4V8G\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
15	4W2F\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
16	4V8G\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of RMF bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
17	4W2I\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
18	1VY6\|1\|BA	Large subunit ribosomal RNA	23S Ribosomal RNA, Cytidine-Puromycin	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
19	4W2G\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
20	1VY5\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
21	4V9H\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-ray diffraction	2.86	2014-07-09
22	1VY7\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA, Cytidine-Puromycin	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
23	4LNT\|1\|YA	Large subunit ribosomal RNA	23S rRNA, tRNA acceptor end mimic	Thermus thermophilus	Bacteria	RF02541	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
24	4W2E\|1\|A	Large subunit ribosomal RNA	23S Ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2014-10-01
25	4V8B\|1\|BA	Large subunit ribosomal RNA	RNA (2912-MER)	Thermus thermophilus	Bacteria	RF02541	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
26	1VY6\|1\|DA	Large subunit ribosomal RNA	23S Ribosomal RNA, Cytidine-Puromycin	Thermus thermophilus	Bacteria	RF02541	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
27	4V67\|1\|DA	Large subunit ribosomal RNA	23S RRNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
28	4V8B\|1\|DA	Large subunit ribosomal RNA	RNA (2912-MER)	Thermus thermophilus	Bacteria	RF02541	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
29	4LNT\|1\|RA	Large subunit ribosomal RNA	23S rRNA, tRNA acceptor end mimic	Thermus thermophilus	Bacteria	RF02541	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
30	4V67\|1\|BA	Large subunit ribosomal RNA	23S RRNA	Thermus thermophilus	Bacteria	RF02541	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
31	4V8D\|1\|BA	Large subunit ribosomal RNA	RNA (2912-MER)	Thermus thermophilus	Bacteria	RF02541	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
32	4V7Y\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
33	4V7X\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
34	4V7Y\|1\|DA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-ray diffraction	3	2014-07-09
35	4V7X\|1\|DA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-ray diffraction	3	2014-07-09
36	4V7W\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
37	4V7W\|1\|DA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-ray diffraction	3	2014-07-09
38	4V90\|1\|BA	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF02541	Thermus thermophilus Ribosome	X-ray diffraction	2.95	2014-07-09
39	4V8D\|1\|DA	Large subunit ribosomal RNA	RNA (2912-MER)	Thermus thermophilus	Bacteria	RF02541	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
40	4V51\|1\|BA	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
41	4V51\|1\|DA	Large subunit ribosomal RNA	23S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF02541	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
42	4V7L\|1\|BA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
43	4V7L\|1\|DA	Large subunit ribosomal RNA	23S ribosomal RNA	Thermus thermophilus	Bacteria	RF02541	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09

Release history

Release	2.0	2.1	2.2	2.3	2.4	2.5	2.6
Date	2014-12-05	2014-12-12	2014-12-19	2014-12-26	2015-01-02	2015-01-09	2015-01-16

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4LNT\|1\|RA	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	2882
2	4V8B\|1\|BA	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	2912
3	4V8D\|1\|BA	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	2912
4	4LNT\|1\|YA	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	2883
5	4V8B\|1\|DA	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	2907
6	4V8D\|1\|DA	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	2907
7	4V8G\|1\|DA	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	2814
8	4V8G\|1\|BA	Crystal structure of RMF bound to the 70S ribosome.	X-RAY DIFFRACTION	3	2809
9	4V8I\|1\|DA	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	2798
10	4V8I\|1\|BA	Crystal structure of YfiA bound to the 70S ribosome.	X-RAY DIFFRACTION	2.7	2827
11	4V9R\|1\|DA	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	2714
12	1VY6\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	2800
13	1VY5\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	2800
14	1VY4\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	2800
15	4W2G\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	2800
16	4W2F\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2800
17	4W2H\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	2800
18	1VY7\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	2800
19	4W2I\|1\|DA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	2800
20	4W2I\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	2822
21	1VY7\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	2819
22	4W2H\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	2822
23	4W2F\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2871
24	1VY4\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	2819
25	4W2G\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	2819
26	1VY5\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	2819
27	1VY6\|1\|BA	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	2819
28	4V9R\|1\|BA	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	2731
29	4W2E\|1\|A	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	2873
30	4V67\|1\|DA	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	2879
31	4V67\|1\|BA	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	2879
32	4V7L\|1\|BA	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	2800
33	4V7L\|1\|DA	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	2800
34	4V51\|1\|DA	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	2772
35	4V51\|1\|BA	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	2772
36	4V7Y\|1\|BA	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	2725
37	4V7Y\|1\|DA	Structure of the Thermus thermophilus 70S ribosome complexed with azithromycin.	X-RAY DIFFRACTION	3	2725
38	4V7X\|1\|DA	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	2725
39	4V7X\|1\|BA	Structure of the Thermus thermophilus ribosome complexed with erythromycin.	X-RAY DIFFRACTION	3	2725
40	4V7W\|1\|BA	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	2725
41	4V7W\|1\|DA	Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.	X-RAY DIFFRACTION	3	2725
42	4V9H\|1\|BA	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-RAY DIFFRACTION	2.86	2859
43	4V90\|1\|BA	Thermus thermophilus Ribosome	X-RAY DIFFRACTION	2.95	2901

Equivalence class NR_3.0_97519.1 Obsolete

Release history

Parents

Children