#IFECompound(s)RNA source organismTitleMethodResolutionDate
11VY4|1|BA (rep)23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
24V8I|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
34V9R|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
44W2H|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
54WPO|1|AA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
64W2F|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
74W2G|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
84W2I|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
94V8I|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
104V9R|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
111VY5|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
121VY4|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
131VY7|1|BA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
144W2H|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
154V8G|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
164WQY|1|AA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82015-01-28
174W2F|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
184V8G|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
194W2I|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
204WQF|1|AA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
214WQU|1|AA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
221VY6|1|BA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
234WPO|1|CA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82015-01-28
244W2G|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
251VY5|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
264V9H|1|BA23S ribosomal RNAThermus thermophilusCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862014-07-09
271VY7|1|DA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
284LNT|1|YA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
294WQU|1|CA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82015-01-28
304W2E|1|A23S Ribosomal RNAThermus thermophilusCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
314V8B|1|BARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
324WQY|1|CA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82015-01-28
331VY6|1|DA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
344WQF|1|CA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82015-01-28
354V67|1|DA23S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
364V8B|1|DARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
374LNT|1|RA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
384V67|1|BA23S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
394V8D|1|BARNA (2912-MER)Thermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
404V7Y|1|BA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
414V7X|1|BA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
424V7Y|1|DA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
434V7X|1|DA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
444V7W|1|BA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
454V7W|1|DA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
464V90|1|BA23S RIBOSOMAL RNAThermus thermophilusThermus thermophilus RibosomeX-RAY DIFFRACTION2.952014-07-09
474V8D|1|DARNA (2912-MER)Thermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
484V51|1|BA23S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
494V51|1|DA23S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
504V7L|1|BA23S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
514V7L|1|DA23S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09

Release history

Release2.122.132.14
Date2015-02-272015-03-062015-03-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_97519.4NR_all_97519.32.12(51) 4V7W|1|DA, 4V9R|1|BA, 4WQF|1|CA, 1VY5|1|BA, 4LNT|1|YA, 4V8D|1|BA, 4V7W|1|BA, 4W2I|1|BA, 4W2E|1|A, 4WQU|1|CA, 4V8G|1|BA, 4V7X|1|DA, 4V9R|1|DA, 4V51|1|DA, 4V8D|1|DA, 1VY5|1|DA, 4V7X|1|BA, 4V51|1|BA, 4W2F|1|BA, 4WQY|1|CA, 4V8I|1|BA, 4W2I|1|DA, 4V7Y|1|BA, 4WQY|1|AA, 4V67|1|DA, 4V8G|1|DA, 1VY6|1|DA, 4V67|1|BA, 1VY6|1|BA, 4V8I|1|DA, 4WPO|1|CA, 4V8B|1|BA, 4W2F|1|DA, 4V7L|1|BA, 4WPO|1|AA, 1VY7|1|BA, 4V7Y|1|DA, 4V9H|1|BA, 4WQF|1|AA, 4V8B|1|DA, 4W2G|1|DA, 4V90|1|BA, 4LNT|1|RA, 4W2G|1|BA, 4V7L|1|DA, 1VY4|1|BA, 1VY7|1|DA, 4WQU|1|AA, 4W2H|1|BA, 1VY4|1|DA, 4W2H|1|DA(0) (128) 4V6G|1|BA, 4L47|1|RA, 4V7P|1|BA, 4V9S|1|BA, 4V9I|1|BA, 4V5P|1|DA, 4V8O|1|BA, 4WT8|1|C1, 4V4Y|1|BA, 4LT8|1|RA, 4V5L|1|BA, 4V9K|1|BA, 4V8J|1|BA, 4V5C|1|BA, 4LFZ|1|RA, 4V84|1|BA, 4P70|1|RA, 4V5S|1|DA, 4V95|1|BA, 4V5J|1|BA, 4V8F|1|AA, 4V9N|1|BA, 4V6A|1|BA, 4L71|1|RA, 4V5F|1|BA, 4V9A|1|BA, 4V8C|1|AA, 4V4R|1|BA, 1VVJ|1|RA, 4V7M|1|BA, 4V5N|1|BA, 4V9L|1|BA, 4V5D|1|BA, 4V87|1|AA, 4V9J|1|BA, 4V5Q|1|DA, 4V5A|1|BA, 4V8U|1|BA, 4V83|1|BA, 4P6F|1|RA, 4V9Q|1|AA, 4V6F|1|AA, 4V9B|1|BA, 4V4T|1|BA, 4V63|1|DA, 4W29|1|BA, 4V97|1|BA, 4V5K|1|BA, 4V4J|1|w, 4V8H|1|BA, 4V7K|1|AA, 4LEL|1|RA, 4V5R|1|DA, 4V8X|1|BA, 4V9M|1|BA, 4V5E|1|BA, 4V8A|1|AA, 4V7Z|1|BA, 4V42|1|BA, 4V7J|1|AA, 4V8N|1|BA, 4LSK|1|RA, 4V5G|1|BA, 4V8E|1|AA, 4V8E|1|CA, 4V4X|1|BA, 4V6G|1|DA, 4L47|1|YA, 4V7P|1|CA, 4LSK|1|YA, 4V5Q|1|BA, 4V9M|1|DA, 4V8Q|1|AA, 4V5E|1|DA, 4V8A|1|BA, 4V9K|1|DA, 4V5S|1|BA, 4V5C|1|DA, 4V8X|1|DA, 4V84|1|DA, 4P70|1|YA, 4V9S|1|DA, 4V5J|1|DA, 4V9I|1|DA, 4V4Z|1|BA, 4V6A|1|DA, 4V7Z|1|DA, 4V9A|1|DA, 4V5M|1|BA, 4V4S|1|BA, 4V8J|1|DA, 4V7M|1|DA, 4LFZ|1|YA, 4V

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14LNT|1|RACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942882
24LNT|1|YACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942883
34V8D|1|BAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32912
44V8B|1|BACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32912
54V8B|1|DACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32907
64V8D|1|DAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32907
74V8G|1|DACrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32814
84V8G|1|BACrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32809
94V8I|1|BACrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72827
104V8I|1|DACrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72798
114V9R|1|BACrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32731
124W2F|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42871
134WQU|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82872
144WPO|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82872
151VY4|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62819
164W2G|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552819
171VY5|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552819
181VY6|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92819
194W2H|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72822
204WQF|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82852
214WQY|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82852
221VY7|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82819
234W2I|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72822
244W2I|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72800
251VY7|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82800
264W2H|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72800
274V9R|1|DACrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32714
281VY6|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92800
291VY5|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552800
301VY4|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62800
314WPO|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.82868
324W2G|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552800
334W2F|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42800
344WQU|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.82868
354WQY|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)X-RAY DIFFRACTION2.82848
364WQF|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.82848
374W2E|1|ACrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92873
384V67|1|BACrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32879
394V67|1|DACrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32879
404V7L|1|DAThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32800
414V7L|1|BAThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32800
424V51|1|BAStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82772
434V51|1|DAStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82772
444V7Y|1|BAStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32725
454V7Y|1|DAStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32725
464V7X|1|DAStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32725
474V7X|1|BAStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32725
484V7W|1|BAStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32725
494V7W|1|DAStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32725
504V9H|1|BACrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862859
514V90|1|BAThermus thermophilus RibosomeX-RAY DIFFRACTION2.952901