#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A6 (rep)18S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24U4R|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
34U50|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
44U4Q|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
54U3U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
65LYB|1|618S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
74U52|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
84U4U|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
94V88|1|A218S RIBOSOMAL RNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
104U4R|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
115FCJ|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
125I4L|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
134U3U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
145FCI|1|618S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
155DC3|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
164U3N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
174U6F|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
184U4N|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
194U55|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
205DAT|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
214U4Y|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
224U53|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
234U4Q|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
244U4U|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
254U4Z|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
264U4N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
274U52|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
284U3M|1|618S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
295MEI|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
304U51|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
315DGV|1|6Saccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
324U3M|1|218S rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
334U55|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
344U51|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
354U4Z|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
365I4L|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
375TGA|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
384U3N|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
395DGV|1|2Saccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
404U50|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
414U56|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
425DGF|1|618S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
434U4Y|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
445LYB|1|218S rRNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
454U53|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
464U6F|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
475TGA|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
485MEI|1|A18S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
495TGM|1|618S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
505DGE|1|618S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
515DC3|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
525FCJ|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
535DAT|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
545TGM|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
555FCI|1|218S ribosomal RNASaccharomyces cerevisiaeStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
565DGE|1|218S ribosomal RNASaccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
574U56|1|218S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
585DGF|1|218S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
595M1J|1|2218S ribosomal RNASaccharomyces cerevisiaeNonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
605JUP|1|A18S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05

Release history

Release2.1352.1362.1372.138
Date2017-07-042017-07-102017-07-152017-07-26

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15MEI|1|6Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51783
24U56|1|6Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
34U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
44U50|1|6Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
54U53|1|6Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
64U55|1|6Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
74U4Z|1|6Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
84U4Y|1|6Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
94U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
104U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
114U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
124U3N|1|6Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
134U6F|1|6Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
145TGA|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31796
155LYB|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251796
164V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
174U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
184U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
194U4N|1|6Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
205I4L|1|6Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
214U51|1|6Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
225FCI|1|6Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41796
235FCJ|1|6Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11796
245TGM|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51796
255DGV|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11796
265DGE|1|6Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451796
275DC3|1|6Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251796
285DGF|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31796
295DAT|1|6Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151796
305JUP|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.51781
315TGM|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51782
325DAT|1|2Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151782
335DGF|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31782
345DGE|1|2Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451782
355DC3|1|2Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251782
365DGV|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11782
375FCJ|1|2Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.11782
385FCI|1|2Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.41782
395MEI|1|ACrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51781
405TGA|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31782
415LYB|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251782
424V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
435I4L|1|2Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
444U4N|1|2Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
454U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
464U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
474U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
484U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
494U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
504U4Y|1|2Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
514U6F|1|2Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
524U3N|1|2Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
534U4Z|1|2Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
544U55|1|2Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
554U51|1|2Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
564U53|1|2Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
574U50|1|2Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
584U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
594U56|1|2Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
605M1J|1|22Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.31781