#IFECompound(s)RNA source organismTitleMethodResolutionDate
11XPE|1|A+ 1XPE|1|B (rep)5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'HIV-1 subtype B genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION1.942005-10-18
21XPF|1|A+ 1XPF|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype A genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.32005-10-18
32B8S|1|A+ 2B8S|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'Structure of HIV-1(MAL) genomic RNA DISX-RAY DIFFRACTION2.762005-10-25
42B8R|1|A+ 2B8R|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'Structure oF HIV-1(LAI) genomic RNA DISX-RAY DIFFRACTION2.62005-10-25
51XP7|1|A+ 1XP7|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype F genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.52005-10-18
61Y3O|1|A+ 1Y3O|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- Mn soakedX-RAY DIFFRACTION2.72005-11-08
72FCY|1|A+ 2FCY|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with NeomycinX-RAY DIFFRACTION2.22006-05-16
81ZCI|1|A+ 1ZCI|1|B5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.652006-01-31
92FCX|1|A+ 2FCX|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with neamineX-RAY DIFFRACTION22006-05-16
101Y3S|1|A+ 1Y3S|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- MPD formX-RAY DIFFRACTION2.252005-11-08
112FCZ|1|A+ 2FCZ|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.012006-05-16
121YXP|1|A+ 1YXP|1|B5'-R(*CP*UP*(5BU)P*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- Zn soakedX-RAY DIFFRACTION2.42006-01-31
132FD0|1|A+ 2FD0|1|BHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with lividomycinX-RAY DIFFRACTION1.82006-05-16
141ZCI|1|C+ 1ZCI|1|D5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.652006-01-31
152FCZ|1|C+ 2FCZ|1|DHIV-1 DIS RNAHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.012006-05-16
161K9W|1|BHIV-1 DIS(Mal)UU RNAHIV-1(MAL) RNA Dimerization Initiation SiteX-RAY DIFFRACTION3.12001-11-30
171K9W|1|DHIV-1 DIS(Mal)UU RNAHIV-1(MAL) RNA Dimerization Initiation SiteX-RAY DIFFRACTION3.12001-11-30
181Y99|1|A+ 1Y99|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype A DIS RNA duplexX-RAY DIFFRACTION2.42004-12-21
191O3Z|1|B+ 1O3Z|1|AHIV-1 DIS(MAL) GENOMIC RNAHIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKEDX-RAY DIFFRACTION2.652003-05-27
201Y73|1|B+ 1Y73|1|A5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 Dis(Mal) Duplex Pt-SoakedX-RAY DIFFRACTION2.92004-12-21
211Y95|1|B+ 1Y95|1|A5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 Dis(Mal) Duplex Pb-SoakedX-RAY DIFFRACTION2.82004-12-21
221Y6T|1|B+ 1Y6T|1|A5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 Dis(Mal) Duplex Co Hexamine-SoakedX-RAY DIFFRACTION2.62004-12-21
231NLC|1|B+ 1NLC|1|AHIV-1 DIS(MAL) genomic RNAHIV-1 DIS(Mal) duplex Zn-soakedX-RAY DIFFRACTION1.852003-05-13
241Y6S|1|B+ 1Y6S|1|A5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 DIS(Mal) duplex Ba-soakedX-RAY DIFFRACTION2.92004-12-21
251WVD|1|B+ 1WVD|1|A5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 Dis(Mal) Duplex CoCl2-SoakedX-RAY DIFFRACTION2.932004-12-21
26462D|1|B+ 462D|1|ARNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3')CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-RAY DIFFRACTION2.31999-12-02
271Y90|1|B+ 1Y90|1|A5'-R(*CP*(5BU)P*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 Dis(Mal) Duplex Mn-SoakedX-RAY DIFFRACTION3.082004-12-21
282OIY|1|A+ 2OIY|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-RAY DIFFRACTION1.62007-12-25
292OIJ|1|A+ 2OIJ|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'HIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-RAY DIFFRACTION2.312007-02-13
302OJ0|1|A+ 2OJ0|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation site MN soakedX-RAY DIFFRACTION2.62007-12-25
313C44|1|A+ 3C44|1|BHIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-RAY DIFFRACTION22008-05-06
322QEK|1|A+ 2QEK|1|BHIV-1 subtype F DIS genomic RNAHIV-1 subtype F DIS RNA extended duplex formX-RAY DIFFRACTION1.82008-05-06
333FAR|1|A+ 3FAR|1|BRNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3')Cation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.42009-11-24
343DVV|1|A+ 3DVV|1|BHIV-1 genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-RAY DIFFRACTION22008-08-12

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
12QEK|1|A+2QEK|1|BHIV-1 subtype F DIS RNA extended duplex formX-RAY DIFFRACTION1.823
21Y90|1|B+1Y90|1|AHIV-1 Dis(Mal) Duplex Mn-SoakedX-RAY DIFFRACTION3.0825
31WVD|1|B+1WVD|1|AHIV-1 Dis(Mal) Duplex CoCl2-SoakedX-RAY DIFFRACTION2.9326
41NLC|1|B+1NLC|1|AHIV-1 DIS(Mal) duplex Zn-soakedX-RAY DIFFRACTION1.8526
51O3Z|1|B+1O3Z|1|AHIV-1 DIS(MAL) DUPLEX RU HEXAMINE-SOAKEDX-RAY DIFFRACTION2.6526
6462D|1|B+462D|1|ACRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-RAY DIFFRACTION2.326
71Y95|1|B+1Y95|1|AHIV-1 Dis(Mal) Duplex Pb-SoakedX-RAY DIFFRACTION2.826
81Y73|1|B+1Y73|1|AHIV-1 Dis(Mal) Duplex Pt-SoakedX-RAY DIFFRACTION2.926
91Y6T|1|B+1Y6T|1|AHIV-1 Dis(Mal) Duplex Co Hexamine-SoakedX-RAY DIFFRACTION2.626
101Y6S|1|B+1Y6S|1|AHIV-1 DIS(Mal) duplex Ba-soakedX-RAY DIFFRACTION2.926
111Y99|1|A+1Y99|1|BHIV-1 subtype A DIS RNA duplexX-RAY DIFFRACTION2.426
122OJ0|1|A+2OJ0|1|BCrystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation site MN soakedX-RAY DIFFRACTION2.623
133FAR|1|A+3FAR|1|BCation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.423
142OIY|1|A+2OIY|1|BCrystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-RAY DIFFRACTION1.623
152OIJ|1|A+2OIJ|1|BHIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-RAY DIFFRACTION2.3123
163C44|1|A+3C44|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-RAY DIFFRACTION223
173DVV|1|A+3DVV|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-RAY DIFFRACTION222
181ZCI|1|A+1ZCI|1|BHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6522
191ZCI|1|C+1ZCI|1|DHIV-1 DIS RNA subtype F- monoclinic formX-RAY DIFFRACTION1.6522
201XPE|1|A+1XPE|1|BHIV-1 subtype B genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION1.9423
212B8R|1|A+2B8R|1|BStructure oF HIV-1(LAI) genomic RNA DISX-RAY DIFFRACTION2.623
222B8S|1|A+2B8S|1|BStructure of HIV-1(MAL) genomic RNA DISX-RAY DIFFRACTION2.7623
231XP7|1|A+1XP7|1|BHIV-1 subtype F genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.523
241YXP|1|A+1YXP|1|BHIV-1 DIS RNA subtype F- Zn soakedX-RAY DIFFRACTION2.422
251Y3S|1|A+1Y3S|1|BHIV-1 DIS RNA subtype F- MPD formX-RAY DIFFRACTION2.2522
261Y3O|1|A+1Y3O|1|BHIV-1 DIS RNA subtype F- Mn soakedX-RAY DIFFRACTION2.722
271XPF|1|A+1XPF|1|BHIV-1 subtype A genomic RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.323
281K9W|1|BHIV-1(MAL) RNA Dimerization Initiation SiteX-RAY DIFFRACTION3.123
291K9W|1|DHIV-1(MAL) RNA Dimerization Initiation SiteX-RAY DIFFRACTION3.123
302FCX|1|A+2FCX|1|BHIV-1 DIS kissing-loop in complex with neamineX-RAY DIFFRACTION222
312FCZ|1|C+2FCZ|1|DHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0122
322FCY|1|A+2FCY|1|BHIV-1 DIS kissing-loop in complex with NeomycinX-RAY DIFFRACTION2.222
332FD0|1|A+2FD0|1|BHIV-1 DIS kissing-loop in complex with lividomycinX-RAY DIFFRACTION1.822
342FCZ|1|A+2FCZ|1|BHIV-1 DIS kissing-loop in complex with ribostamycinX-RAY DIFFRACTION2.0122