#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15J7L|1|DB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
25JC9|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.032016-07-06
35J8A|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.12016-07-06
44YBB|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
56I7V|1|DB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.92018-12-05
64WOI|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
75IT8|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.122016-07-27
85J91|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
94U27|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
105J88|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
114WF1|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
124WOI|1|CB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
134V9D|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
144V9P|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
154V9P|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
164U24|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
174V9O|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
184WWW|1|RB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
194U26|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
204V9P|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
214V7T|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
224V9O|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
234V6C|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
244U25|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
254V9O|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
264V9P|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
274U1U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
284V7U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09
294U20|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
304V7V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
314V9C|1|DB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
324U1V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
334V52|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
345J7L|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
354V52|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-ray diffraction3.212014-07-09
364V7S|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
375J8A|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-ray diffraction3.12016-07-06
384V9D|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
394V50|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
405JC9|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-ray diffraction3.032016-07-06
414V85|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-ray diffraction3.22014-07-09
426I7V|1|CB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Ribosomal protein paralogs bL31 and bL36X-ray diffraction2.92018-12-05
434V57|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
444V64|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
454V64|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-ray diffraction3.52014-07-09
464V57|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-ray diffraction3.52014-07-09
474V54|1|BA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
484V54|1|DA5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-ray diffraction3.32014-07-09
494V9O|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
504U27|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
514WF1|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to negamycin.X-ray diffraction3.092014-11-05
525J88|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-ray diffraction3.322016-07-06
534U25|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
544V4Q|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
554U1V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
564V50|1|BA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-ray diffraction3.222014-07-09
574V4Q|1|DA5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-ray diffraction3.462014-07-09
584YBB|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
594U26|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
604U1U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
614V9C|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
624V7T|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to chloramphenicol.X-ray diffraction3.192014-07-09
634U20|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
645IT8|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction3.122016-07-27
654U24|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
664WWW|1|YB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to CEM-101X-ray diffraction3.12014-12-24
675J91|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
684V6C|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-ray diffraction3.192014-07-09
694V7V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to clindamycin.X-ray diffraction3.292014-07-09
704V7S|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to telithromycin.X-ray diffraction3.252014-07-09
714V7U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to erythromycin.X-ray diffraction3.12014-07-09
725J5B|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
734V4H|1|BA5S ribosomal RNA5S RIBOSOMAL RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
744V4H|1|DA5S ribosomal RNA5S RIBOSOMAL RNAEscherichia coliBacteriaRF00001Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-ray diffraction3.462014-07-09
755J5B|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
765AFI|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000012.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
776ORE|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Release complex 70SElectron microscopy2.92019-06-19
786U48|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001E. coli 50S with phazolicin (PHZ) bound in exit tunnelElectron microscopy2.872019-09-18
795NWY|1|O5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF000012.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexElectron microscopy2.92017-07-19
805MDV|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)Electron microscopy2.972016-12-14
815H5U|1|B5S ribosomal RNA5S Ribosomal RNAEscherichia coliBacteriaRF00001Mechanistic insights into the alternative translation termination by ArfA and RF2Electron microscopy3.012017-01-25
826HRM|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 70S d2d8 stapled ribosomeElectron microscopy2.962018-12-19
836H4N|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeElectron microscopy32018-09-05
846QUL|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidElectron microscopy32019-04-10
855WFS|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)Electron microscopy32018-05-02
865MDZ|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the 70S ribosome (empty A site)Electron microscopy3.12016-12-14
876ENU|1|B5S ribosomal RNA5S Ribosomal RNAEscherichia coliBacteriaRF00001Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.12017-11-22
885MDW|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.062016-12-14
895MGP|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.12016-12-14
906ENF|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.22017-11-22
915U9G|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000013.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)Electron microscopy3.22017-03-22
925U9F|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000013.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)Electron microscopy3.22017-03-22
935UYM|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)Electron microscopy3.22017-06-07
946C4I|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Conformation of methylated GGQ in the peptidyl transferase center during translation terminationElectron microscopy3.242018-02-21
955WDT|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GppNHpElectron microscopy32018-04-25
966OG7|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)Electron microscopy3.32019-09-25
975WE4|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu wt complex with GppNHpElectron microscopy3.12018-04-25
986OFX|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Non-rotated ribosome (Structure I)Electron microscopy3.32019-09-25
994V80|1|BB5S rRNACrystal structure of the E. coli ribosome bound to CEM-101.X-ray diffraction3.32014-07-09
1004V80|1|DB5S rRNACrystal structure of the E. coli ribosome bound to CEM-101.X-ray diffraction3.32014-07-09
1013JBV|1|a5S ribosomal RNARNA (118-MER)Escherichia coliBacteriaRF00001Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.322016-01-27
1025GAE|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001RNC in complex with a translocating SecYEGElectron microscopy3.332016-01-27
1036I0Y|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelElectron microscopy3.22018-12-05
1045MDY|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)Electron microscopy3.352016-12-21
1055WFK|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)Electron microscopy3.42018-05-02
1065LZD|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)Electron microscopy3.42016-11-23
1076OGI|1|25S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)Electron microscopy3.42019-09-25
1083JCE|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
1095O2R|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Cryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeElectron microscopy3.42017-07-26
1105LZE|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)Electron microscopy3.52016-11-23
1116BU8|1|025S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF0000170S ribosome with S1 domains 1 and 2 (Class 1)Electron microscopy3.52018-01-31
1126OSQ|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001RF1 accommodated state bound Release complex 70S at long incubation time pointElectron microscopy3.52019-06-26
1135U4I|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeElectron microscopy3.52017-01-11
1146ORL|1|35S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001RF1 pre-accommodated 70S complex at 24 msElectron microscopy3.52019-06-19
1155WE6|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF0000170S ribosome-EF-Tu H84A complex with GTP and cognate tRNAElectron microscopy3.42018-04-25
1165IQR|1|35S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04

Release history

Release3.933.94
Date2019-09-252019-10-03

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15U4I|1|BStructural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeELECTRON MICROSCOPY3.5118
26ORL|1|3RF1 pre-accommodated 70S complex at 24 msELECTRON MICROSCOPY3.5120
36OGI|1|270S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)ELECTRON MICROSCOPY3.4120
46OFX|1|2Non-rotated ribosome (Structure I)ELECTRON MICROSCOPY3.3120
56OG7|1|270S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)ELECTRON MICROSCOPY3.3120
65GAE|1|BRNC in complex with a translocating SecYEGELECTRON MICROSCOPY3.33120
75O2R|1|BCryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeELECTRON MICROSCOPY3.4120
85MGP|1|BStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.1120
95AFI|1|B2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
105UYM|1|0270S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.2120
116BU8|1|0270S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.5120
125U9F|1|023.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)ELECTRON MICROSCOPY3.2119
135U9G|1|023.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)ELECTRON MICROSCOPY3.2119
145LZE|1|BStructure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)ELECTRON MICROSCOPY3.5120
156H4N|1|BStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY3120
166ENF|1|BCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.2120
176ENU|1|BPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.1120
185WFS|1|B70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY3120
195WE4|1|B70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.1120
205WDT|1|B70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY3120
215WFK|1|B70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.4120
225WE6|1|B70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.4120
235H5U|1|BMechanistic insights into the alternative translation termination by ArfA and RF2ELECTRON MICROSCOPY3.01120
246HRM|1|3E. coli 70S d2d8 stapled ribosomeELECTRON MICROSCOPY2.96120
253JCE|1|BStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.2118
265LZD|1|BStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)ELECTRON MICROSCOPY3.4120
276QUL|1|BStructure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidELECTRON MICROSCOPY3120
286U48|1|CBE. coli 50S with phazolicin (PHZ) bound in exit tunnelELECTRON MICROSCOPY2.87118
296OSQ|1|3RF1 accommodated state bound Release complex 70S at long incubation time pointELECTRON MICROSCOPY3.5120
304V85|1|BBCrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.2118
314V7U|1|BBCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1118
324V7V|1|BBCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29118
334V7T|1|BBCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19118
344V6C|1|BBCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19118
354V7S|1|BBCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25118
364V80|1|BBCrystal structure of the E. coli ribosome bound to CEM-101.X-RAY DIFFRACTION3.3118
374WWW|1|RBCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1118
384U26|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8119
394U24|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9119
404U25|1|BBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9119
414U27|1|BBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8119
424WF1|1|BBCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09119
434U1U|1|BBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95119
444U20|1|BBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9119
454U1V|1|BBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3119
465J88|1|DBStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.32120
475IT8|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.12120
485J8A|1|DBStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.1120
495J7L|1|DBStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3120
505JC9|1|DBStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.03120
515J91|1|DBStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96120
525J5B|1|DBStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8120
534YBB|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
546I7V|1|DBRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.9119
554V9D|1|CBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3119
564V9C|1|DBAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3119
574WOI|1|BB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3119
586I0Y|1|BTnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnelELECTRON MICROSCOPY3.2118
594V9O|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
604V9O|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
614V9P|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
624V9P|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
634V9P|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
644V9O|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
654YBB|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
665J88|1|CBStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.32118
675IT8|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.12118
685J91|1|CBStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96118
695J5B|1|CBStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8118
705J8A|1|CBStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.1118
715J7L|1|CBStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3118
725JC9|1|CBStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.03118
736ORE|1|3Release complex 70SELECTRON MICROSCOPY2.9120
745NWY|1|O2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.9118
756C4I|1|BConformation of methylated GGQ in the peptidyl transferase center during translation terminationELECTRON MICROSCOPY3.24120
765MDV|1|3Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.97120
775MDZ|1|3Structure of the 70S ribosome (empty A site)ELECTRON MICROSCOPY3.1120
785MDW|1|3Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.06120
795MDY|1|3Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.35120
805IQR|1|3Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY3118
814V9D|1|DBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3118
824WF1|1|DBCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.09118
834U1U|1|DBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95118
844U20|1|DBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9118
854U1V|1|DBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3118
864U27|1|DBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8118
874U25|1|DBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9118
884U26|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8118
894U24|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9118
906I7V|1|CBRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.9118
914V80|1|DBCrystal structure of the E. coli ribosome bound to CEM-101.X-RAY DIFFRACTION3.3117
924WWW|1|YBCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.1117
934V7S|1|DBCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.25117
944V6C|1|DBCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.19117
954V7V|1|DBCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.29117
964V7T|1|DBCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.19117
974V7U|1|DBCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.1117
984WOI|1|CB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3118
994V9C|1|BBAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.3118
1004V9P|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
1014V9O|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
1024V4H|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117
1034V4Q|1|BACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
1044V50|1|DACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
1054V50|1|BACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.22117
1064V54|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
1074V64|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
1084V52|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
1094V57|1|BACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
1104V57|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.5117
1114V52|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.21117
1124V64|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.5117
1134V54|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.3117
1144V4H|1|DACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.46117
1154V4Q|1|DACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.46117
1163JBV|1|aMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.32117