BGSU RNA Site //

Equivalence class NR_3.5_10255.13 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
16SGC|1|74 (rep)5S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
26R5Q|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
36R6P|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
46P5K|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.12019-09-18
56P5J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.12019-09-18
66P5I|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.12019-09-18
76T59|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.112019-11-27
86P5N|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.22019-09-25
96D9J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
105LZS|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
115LZV|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
126MTD|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
131VWY|1|75S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
141VWW|1|75S ribosomal RNAStructure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
153J71|1|75S ribosomal RNAStructure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.42014-06-18
163J72|1|75S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.42014-06-18
176MTE|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
181VX3|1|75S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.52014-06-18
193J74|1|75S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.52014-06-18
205LZZ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
216MTC|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
226D90|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
236GZ5|1|A45S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
243JAH|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12

Release history

Release3.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.150
Date2019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_10255.13NR_3.5_10255.123.103(23) 1VWW|1|7, 6T59|1|74, 6R6P|1|7, 6R5Q|1|7, 6P5N|1|7, 6P5K|1|7, 6P5J|1|7, 6P5I|1|7, 6MTE|1|7, 6MTD|1|7, 6MTC|1|7, 6GZ5|1|A4, 6D9J|1|7, 6D90|1|7, 5LZZ|1|7, 5LZV|1|7, 5LZS|1|7, 3JAH|1|7, 3J74|1|7, 3J72|1|7, 3J71|1|7, 1VX3|1|7, 1VWY|1|7(1) 6SGC|1|74(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_10255.13NR_3.5_10255.143.151(18) 6T59|1|74, 5LZS|1|7, 5LZZ|1|7, 6GZ5|1|A4, 6MTE|1|7, 6P5J|1|7, 6R5Q|1|7, 6R6P|1|7, 5LZV|1|7, 6D9J|1|7, 6MTC|1|7, 6P5I|1|7, 6P5N|1|7, 6D90|1|7, 6P5K|1|7, 6SGC|1|74, 3JAH|1|7, 6MTD|1|7(6) 1VWW|1|7, 3J72|1|7, 1VX3|1|7, 3J74|1|7, 3J71|1|7, 1VWY|1|7(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16GZ5|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.5119
26R6P|1|7Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.1120
36R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
46MTE|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.4120
56MTD|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.3120
66MTC|1|7Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.4120
76P5I|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.1119
86P5K|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.1119
96P5J|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.1119
105LZV|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.35120
115LZS|1|7Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.31119
125LZZ|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.47120
133JAH|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.45120
146SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
156T59|1|74Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.11120
166P5N|1|7Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.2119
176D90|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.2119
183J72|1|7Structure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.4120
191VWY|1|7Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.4120
201VWW|1|7Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.4120
213J71|1|7Structure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.4120
223J74|1|7Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.5120
231VX3|1|7Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.5120
246D9J|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.2119