#IFECompound(s)RNA source organismTitleMethodResolutionDate
17O7Y|1|B7 (rep)5S rRNAOryctolagus cuniculusRabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.22021-06-02
27O7Z|1|B75SOryctolagus cuniculusRabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.42021-06-02
37OBR|1|75S ribosomal RNAOryctolagus cuniculusRNC-SRP early complexELECTRON MICROSCOPY2.82021-07-21
46SGC|1|745S ribosomal RNAOryctolagus cuniculusRabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
57O80|1|B75S rRNAOryctolagus cuniculusRabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.92021-06-02
66R5Q|1|75S rRNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
76R6P|1|75S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
87NWI|1|75S ribosomal RNAOryctolagus cuniculusMammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.132021-07-07
96P5K|1|75S rRNAOryctolagus cuniculusStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.12019-09-18
107O81|1|B75S rRNAOryctolagus cuniculusRabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.12021-06-02
116P5J|1|75S rRNAOryctolagus cuniculusStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.12019-09-18
126P5I|1|75S rRNAOryctolagus cuniculusStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.12019-09-18
136T59|1|745S ribosomal RNAOryctolagus cuniculusStructure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.112019-11-27
147NFX|1|75S ribosomal RNAOryctolagus cuniculusMammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.22021-06-02
156P5N|1|75S rRNAOryctolagus cuniculusStructure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.22019-09-25
167MDZ|1|75S rRNAOryctolagus cuniculus80S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.22021-09-01
176D9J|1|75S rRNAOryctolagus cuniculusMammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
185LZS|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
195LZV|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
206MTD|1|75S rRNAOryctolagus cuniculusRabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
216ZVK|1|d25S RIBOSOMAL RNAOryctolagus cuniculusThe Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.492020-12-23
226MTE|1|75S rRNAOryctolagus cuniculusRabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
235LZZ|1|75S ribosomal RNAOryctolagus cuniculusStructure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
246MTC|1|75S rRNAOryctolagus cuniculusRabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
256D90|1|75S rRNAOryctolagus cuniculusMammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
266GZ5|1|A45S ribosomal RNAOryctolagus cuniculustRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
273JAH|1|75S ribosomal RNAOryctolagus cuniculusStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12

Release history

Release3.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.220
Date2021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-02

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16ZVK|1|d2The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.49120
26GZ5|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.5119
37O81|1|B7Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.1119
47O80|1|B7Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.9119
56SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
67O7Z|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.4119
77O7Y|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.2119
86P5I|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.1119
96P5K|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.1119
106P5J|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.1119
116T59|1|74Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.11120
125LZV|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.35120
135LZS|1|7Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.31119
145LZZ|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.47120
153JAH|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.45120
166MTE|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.4120
176MTD|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.3120
186MTC|1|7Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.4120
197MDZ|1|780S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.2119
206R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
216R6P|1|7Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.1120
227NFX|1|7Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.2120
237OBR|1|7RNC-SRP early complexELECTRON MICROSCOPY2.8120
246P5N|1|7Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.2119
256D90|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.2119
267NWI|1|7Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.13120
276D9J|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.2119