#IFECompound(s)RNA source organismTitleMethodResolutionDate
16D8A|1|C (rep)RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-RAY DIFFRACTION2.252018-07-25
26D92|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-RAY DIFFRACTION1.812018-07-25
36D92|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-RAY DIFFRACTION1.812018-07-25
46D8P|1|ERNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-RAY DIFFRACTION2.12018-07-25
56D8P|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-RAY DIFFRACTION2.12018-07-25
66D8A|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-RAY DIFFRACTION2.252018-07-25
76D9K|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-RAY DIFFRACTION22018-07-25
86D9K|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-RAY DIFFRACTION22018-07-25
96D95|1|BRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex with Guide RNA Paired and Target DNA containing A8-A8' Non-Canonical PairX-RAY DIFFRACTION1.852018-08-08
106D95|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesTernary RsAgo Complex with Guide RNA Paired and Target DNA containing A8-A8' Non-Canonical PairX-RAY DIFFRACTION1.852018-08-08
116D8F|1|CRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-RAY DIFFRACTION2.152018-07-25
126D8F|1|HRNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3')Rhodobacter sphaeroidesRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-RAY DIFFRACTION2.152018-07-25

Release history

Release3.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.103
Date2018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-292019-12-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_12111.2NR_3.5_12111.13.34(10) 6D92|1|H, 6D92|1|C, 6D8P|1|E, 6D8P|1|C, 6D8F|1|H, 6D8F|1|C, 6D8A|1|H, 6D8A|1|C, 6D9K|1|H, 6D9K|1|C(2) 6D95|1|B, 6D95|1|H(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16D92|1|HTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-RAY DIFFRACTION1.8118
26D8A|1|HRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-RAY DIFFRACTION2.2518
36D8F|1|HRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-RAY DIFFRACTION2.1518
46D8P|1|CTernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-RAY DIFFRACTION2.118
56D9K|1|HTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-RAY DIFFRACTION218
66D9K|1|CTernary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical PairX-RAY DIFFRACTION218
76D8P|1|ETernary RsAgo Complex Containing Guide RNA Paired with Target DNAX-RAY DIFFRACTION2.118
86D8F|1|CRsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed SegmentX-RAY DIFFRACTION2.1518
96D8A|1|CRsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target StrandX-RAY DIFFRACTION2.2518
106D92|1|CTernary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3X-RAY DIFFRACTION1.8118
116D95|1|HTernary RsAgo Complex with Guide RNA Paired and Target DNA containing A8-A8' Non-Canonical PairX-RAY DIFFRACTION1.8520
126D95|1|BTernary RsAgo Complex with Guide RNA Paired and Target DNA containing A8-A8' Non-Canonical PairX-RAY DIFFRACTION1.8518