#IFECompound(s)RNA source organismTitleMethodResolutionDate
13UCZ|1|R (rep)RNA (92-MER), RNA (5'-R(*GP*G)-3')The c-di-GMP-I riboswitch bound to GpGX-RAY DIFFRACTION2.82012-01-04
23UD3|1|RRNA (92-MER), RNA (5'-R(P*GP*A)-3')The C92U mutant c-di-GMP-I riboswitch bound to pGpAX-RAY DIFFRACTION3.12012-01-04
33UCU|1|RRNA (92-MER), diguanosine monophosphateThe c-di-GMP-I riboswitch bound to pGpGX-RAY DIFFRACTION2.82012-01-04
43MXH|1|Rc-di-GMP riboswitchNative structure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.32010-08-25
53MUR|1|RC92U mutant c-di-GMP riboswitchCrystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION32010-08-25
63MUV|1|RG20A/C92U mutant c-di-GMP riboswitchCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMPX-RAY DIFFRACTION3.22010-08-25
74YB1|1|RRNA (91-MER)Vibrio cholerae20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMPX-RAY DIFFRACTION2.082015-04-15
83UD4|1|RRNA (92-MER), RNA (5'-R(*GP*A)-3')The C92U mutant c-di-GMP-I riboswitch bound to GpAX-RAY DIFFRACTION2.72012-01-04
93MUM|1|RG20A mutant c-di-GMP RiboswitchCrystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION2.92010-08-25
103IRW|1|Rc-di-GMP RiboswitchVibrio choleraeStructure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.72009-11-10
113IWN|1|AC-di-GMP riboswitchCo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.22009-11-10
123MUT|1|RG20A/C92U mutant c-di-GMP riboswitchCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION32010-08-25
133IWN|1|BC-di-GMP riboswitchCo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.22009-11-10

Release history

Release2.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_12260.2NR_all_12260.12.19(12) 3UD4|1|R, 3UD3|1|R, 3UCZ|1|R, 3UCU|1|R, 3MXH|1|R, 3MUV|1|R, 3MUT|1|R, 3MUR|1|R, 3MUM|1|R, 3IWN|1|B, 3IWN|1|A, 3IRW|1|R(1) 4YB1|1|R(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14YB1|1|R20A Mutant c-di-GMP Vc2 Riboswitch bound with 3',3'-cGAMPX-RAY DIFFRACTION2.0891
23MUV|1|RCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMPX-RAY DIFFRACTION3.290
33IRW|1|RStructure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.790
43UD4|1|RThe C92U mutant c-di-GMP-I riboswitch bound to GpAX-RAY DIFFRACTION2.791
53UD3|1|RThe C92U mutant c-di-GMP-I riboswitch bound to pGpAX-RAY DIFFRACTION3.191
63UCU|1|RThe c-di-GMP-I riboswitch bound to pGpGX-RAY DIFFRACTION2.891
73UCZ|1|RThe c-di-GMP-I riboswitch bound to GpGX-RAY DIFFRACTION2.891
83MUR|1|RCrystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
93MUT|1|RCrystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION391
103MUM|1|RCrystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMPX-RAY DIFFRACTION2.991
113MXH|1|RNative structure of a c-di-GMP riboswitch from V. choleraeX-RAY DIFFRACTION2.391
123IWN|1|BCo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.293
133IWN|1|ACo-crystal structure of a bacterial c-di-GMP riboswitchX-RAY DIFFRACTION3.293