NR_3.5_17405.4

Members (16)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Å	Date
1	5DM6\|1\|Y (rep)	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans	X-ray diffraction	2.9	2015-11-11
2	4IOA\|1\|Y	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans	X-ray diffraction	3.2	2013-03-06
3	4IO9\|1\|Y	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans	X-ray diffraction	3.2	2013-03-06
4	2ZJR\|1\|Y	5S ribosomal RNA	ribosomal 5S RNA	Deinococcus radiodurans	Bacteria	RF00001	Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans	X-ray diffraction	2.91	2008-06-17
5	2ZJQ\|1\|Y	5S ribosomal RNA	ribosomal 5S RNA	Deinococcus radiodurans	Bacteria	RF00001	Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit	X-ray diffraction	3.3	2008-06-17
6	3CF5\|1\|Z	5S ribosomal RNA	RRNA-5S RIBOSOMAL RNA	Deinococcus radiodurans	Bacteria	RF00001	Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans	X-ray diffraction	3.3	2008-06-17
7	3DLL\|1\|Z	5S ribosomal RNA	rRNA-5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning	X-ray diffraction	3.5	2008-09-16
8	5DM7\|1\|Y	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A	X-ray diffraction	3	2015-11-11
9	1Y69\|1\|9	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans	X-ray diffraction	3.33	2005-03-01
10	1XBP\|1\|9	5S ribosomal RNA	5S RIBOSOMAL RNA	Deinococcus radiodurans	Bacteria	RF00001	Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin	X-ray diffraction	3.5	2005-03-01
11	3PIP\|1\|Y	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit	X-ray diffraction	3.45	2011-02-23
12	1SM1\|1\|9	5S ribosomal RNA	5S RIBOSOMAL RNA	Deinococcus radiodurans	Bacteria	RF00001	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN	X-ray diffraction	3.42	2004-08-03
13	1NWX\|1\|9	5S ribosomal RNA	5S RIBOSOMAL RNA	Deinococcus radiodurans	Bacteria	RF00001	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773	X-ray diffraction	3.5	2003-03-18
14	1NKW\|1\|9	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans	X-ray diffraction	3.1	2003-02-11
15	1NWY\|1\|9	5S ribosomal RNA	5S RIBOSOMAL RRNA	Deinococcus radiodurans	Bacteria	RF00001	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN	X-ray diffraction	3.3	2003-03-18
16	3PIO\|1\|Y	5S ribosomal RNA	5S ribosomal RNA	Deinococcus radiodurans	Bacteria	RF00001	Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit	X-ray diffraction	3.25	2011-02-23

Release history

Release	2.55	2.56	2.57	2.58	2.59	2.60	2.61	2.62	2.63	2.64	2.65	2.66	2.67	2.68	2.69	2.70	2.71	2.72	2.73	2.74	2.75	2.76	2.77	2.78	2.79	2.80	2.81	2.82	2.83	2.84	2.85	2.86	2.87	2.88	2.89	2.90	2.91	2.92	2.93	2.94	2.95	2.96	2.97	2.98	2.99	2.100
Date	2015-12-25	2016-01-01	2016-01-08	2016-01-15	2016-01-22	2016-01-29	2016-02-05	2016-02-12	2016-02-19	2016-02-26	2016-03-04	2016-03-11	2016-03-18	2016-03-25	2016-04-01	2016-04-08	2016-04-15	2016-04-22	2016-04-29	2016-05-06	2016-05-13	2016-05-20	2016-05-27	2016-06-03	2016-06-10	2016-06-17	2016-06-24	2016-07-01	2016-07-08	2016-07-15	2016-07-22	2016-07-29	2016-08-05	2016-08-12	2016-08-19	2016-08-26	2016-09-02	2016-09-09	2016-09-16	2016-09-23	2016-09-30	2016-10-07	2016-10-14	2016-10-21	2016-10-28	2016-11-04

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_17405.4	NR_all_17405.3	2.55	(16) 2ZJQ\|1\|Y, 4IO9\|1\|Y, 1Y69\|1\|9, 3PIP\|1\|Y, 1XBP\|1\|9, 3PIO\|1\|Y, 5DM7\|1\|Y, 1SM1\|1\|9, 3DLL\|1\|Z, 1NWY\|1\|9, 3CF5\|1\|Z, 5DM6\|1\|Y, 1NWX\|1\|9, 2ZJR\|1\|Y, 4IOA\|1\|Y, 1NKW\|1\|9	(0)	(5) 2ZJP\|1\|Z, 3JQ4\|1\|B, 4U67\|1\|Y, 3FWO\|1\|B, 4IOC\|1\|Y

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.5_17405.4	NR_3.5_17405.5	2.101	(16) 4IOA\|1\|Y, 4IO9\|1\|Y, 3PIP\|1\|Y, 3PIO\|1\|Y, 3DLL\|1\|Z, 3CF5\|1\|Z, 2ZJR\|1\|Y, 2ZJQ\|1\|Y, 1Y69\|1\|9, 1XBP\|1\|9, 1SM1\|1\|9, 1NWY\|1\|9, 1NWX\|1\|9, 1NKW\|1\|9, 5DM7\|1\|Y, 5DM6\|1\|Y	(0)	(1) 5JVG\|1\|Y

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	3DLL\|1\|Z	The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning	X-RAY DIFFRACTION	3.5	122
2	4IOA\|1\|Y	Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans	X-RAY DIFFRACTION	3.2	122
3	4IO9\|1\|Y	Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans	X-RAY DIFFRACTION	3.2	122
4	2ZJQ\|1\|Y	Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit	X-RAY DIFFRACTION	3.3	122
5	3CF5\|1\|Z	Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans	X-RAY DIFFRACTION	3.3	122
6	2ZJR\|1\|Y	Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans	X-RAY DIFFRACTION	2.91	122
7	3PIP\|1\|Y	Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit	X-RAY DIFFRACTION	3.45	120
8	3PIO\|1\|Y	Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit	X-RAY DIFFRACTION	3.25	120
9	5DM6\|1\|Y	Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans	X-RAY DIFFRACTION	2.9	122
10	5DM7\|1\|Y	Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A	X-RAY DIFFRACTION	3	122
11	1Y69\|1\|9	RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans	X-RAY DIFFRACTION	3.33	118
12	1XBP\|1\|9	Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin	X-RAY DIFFRACTION	3.5	118
13	1NWX\|1\|9	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773	X-RAY DIFFRACTION	3.5	118
14	1NKW\|1\|9	Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans	X-RAY DIFFRACTION	3.1	118
15	1NWY\|1\|9	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN	X-RAY DIFFRACTION	3.3	118
16	1SM1\|1\|9	COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN	X-RAY DIFFRACTION	3.42	118

Equivalence class NR_3.5_17405.4 Obsolete

Release history

Parents

Children