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Equivalence class NR_3.5_17996.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14J7L|1|B (rep)RNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructSyntheticCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-ray diffraction1.82013-03-27
25W0M|1|JU5 single-stranded RNAsynthetic constructSyntheticStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
35BUD|1|ERNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansEukaryaCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.992015-07-08
45W0M|1|IU5 single-stranded RNAsynthetic constructSyntheticStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
55W0M|1|HU5 single-stranded RNAsynthetic constructSyntheticStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-ray diffraction2.32017-06-28
64J7M|1|BRNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3')synthetic constructSyntheticCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-ray diffraction1.72013-03-27
75BUD|1|DRNA (5'-R(P*UP*UP*UP*U)-3')Candida albicansEukaryaCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-ray diffraction1.992015-07-08
86A4E|1|BRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructSyntheticTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.452019-03-13
96A4E|1|DRNA (5'-R(P*UP*UP*UP*UP*U)-3')synthetic constructSyntheticTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-ray diffraction2.452019-03-13
106HXX|1|AaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
116HXX|1|AbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
126HXX|1|AcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
136HXX|1|AdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
146HXX|1|AeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
156HXX|1|AfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
166HXX|1|AgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
176HXX|1|AhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
186HXX|1|AiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
196HXX|1|AjRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
206HXX|1|AkRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
216HXX|1|AlRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
226HXX|1|AmRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
236HXX|1|AnRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
246HXX|1|AoRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
256HXX|1|ApRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
266HXX|1|AqRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
276HXX|1|ArRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
286HXX|1|AsRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
296HXX|1|AtRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
306HXX|1|AuRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
316HXX|1|AvRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
326HXX|1|AwRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
336HXX|1|AxRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
346HXX|1|AyRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
356HXX|1|AzRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
366HXX|1|BaRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
376HXX|1|BbRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
386HXX|1|BcRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
396HXX|1|BdRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
406HXX|1|BeRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
416HXX|1|BfRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
426HXX|1|BgRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
436HXX|1|BhRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07
446HXX|1|BiRNA (5'-R(P*UP*UP*UP*UP*U)-3')Potato virus YVirusesPotato virus YElectron microscopy3.42019-08-07

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14J7M|1|BCrystal structure of mouse DXO in complex with substrate mimic RNA and calcium ionX-RAY DIFFRACTION1.73
24J7L|1|BCrystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ionsX-RAY DIFFRACTION1.85
35BUD|1|ECrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.995
45BUD|1|DCrystal structure of Candida albicans Rai1 in complex with pU5-Mn2+X-RAY DIFFRACTION1.994
56HXX|1|AjPotato virus YELECTRON MICROSCOPY3.45
66HXX|1|AiPotato virus YELECTRON MICROSCOPY3.45
76HXX|1|BcPotato virus YELECTRON MICROSCOPY3.45
86HXX|1|AmPotato virus YELECTRON MICROSCOPY3.45
96HXX|1|AhPotato virus YELECTRON MICROSCOPY3.45
106HXX|1|BbPotato virus YELECTRON MICROSCOPY3.45
116HXX|1|AuPotato virus YELECTRON MICROSCOPY3.45
126HXX|1|AvPotato virus YELECTRON MICROSCOPY3.45
136HXX|1|AqPotato virus YELECTRON MICROSCOPY3.45
146HXX|1|AxPotato virus YELECTRON MICROSCOPY3.45
156HXX|1|AnPotato virus YELECTRON MICROSCOPY3.45
166HXX|1|AoPotato virus YELECTRON MICROSCOPY3.45
176HXX|1|AwPotato virus YELECTRON MICROSCOPY3.45
186HXX|1|BePotato virus YELECTRON MICROSCOPY3.45
196HXX|1|AcPotato virus YELECTRON MICROSCOPY3.45
206HXX|1|AaPotato virus YELECTRON MICROSCOPY3.45
216HXX|1|BiPotato virus YELECTRON MICROSCOPY3.45
226HXX|1|ArPotato virus YELECTRON MICROSCOPY3.45
236HXX|1|AzPotato virus YELECTRON MICROSCOPY3.45
246HXX|1|ApPotato virus YELECTRON MICROSCOPY3.45
256HXX|1|AgPotato virus YELECTRON MICROSCOPY3.45
266HXX|1|BaPotato virus YELECTRON MICROSCOPY3.45
276HXX|1|BgPotato virus YELECTRON MICROSCOPY3.45
286HXX|1|BdPotato virus YELECTRON MICROSCOPY3.45
296HXX|1|AePotato virus YELECTRON MICROSCOPY3.45
306HXX|1|AdPotato virus YELECTRON MICROSCOPY3.45
316HXX|1|AsPotato virus YELECTRON MICROSCOPY3.45
326HXX|1|AfPotato virus YELECTRON MICROSCOPY3.45
336HXX|1|AbPotato virus YELECTRON MICROSCOPY3.45
346HXX|1|AtPotato virus YELECTRON MICROSCOPY3.45
356HXX|1|AlPotato virus YELECTRON MICROSCOPY3.45
366HXX|1|AkPotato virus YELECTRON MICROSCOPY3.45
376HXX|1|BhPotato virus YELECTRON MICROSCOPY3.45
386HXX|1|AyPotato virus YELECTRON MICROSCOPY3.45
396HXX|1|BfPotato virus YELECTRON MICROSCOPY3.45
405W0M|1|JStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
415W0M|1|IStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
425W0M|1|HStructure of human TUT7 catalytic module (CM) in complex with U5 RNAX-RAY DIFFRACTION2.34
436A4E|1|DTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
446A4E|1|BTwo linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34HX-RAY DIFFRACTION2.452
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