#PDBTitleRNA source organismCompoundsMethodResolutionDate
15HNJ|1|E+5HNJ|1|F (rep)Base Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')X-RAY DIFFRACTION1.242016-04-27
25HN2|1|B+5HN2|1|ABase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')X-RAY DIFFRACTION1.52016-04-27
35HNJ|1|A+5HNJ|1|BBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')X-RAY DIFFRACTION1.242016-04-27
45HNQ|1|A+5HNQ|1|BBase Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNAX-RAY DIFFRACTION2.42016-04-27
55HNQ|1|C+5HNQ|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNAX-RAY DIFFRACTION2.42016-04-27
65HNJ|1|C+5HNJ|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')X-RAY DIFFRACTION1.242016-04-27
75HN2|1|C+5HN2|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')X-RAY DIFFRACTION1.52016-04-27
85HNQ|1|E+5HNQ|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNAX-RAY DIFFRACTION2.42016-04-27
95HN2|1|E+5HN2|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexRNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3')X-RAY DIFFRACTION1.52016-04-27
105HNQ|1|G+5HNQ|1|HBase Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNAX-RAY DIFFRACTION2.42016-04-27
115HNQ|1|I+5HNQ|1|JBase Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNAX-RAY DIFFRACTION2.42016-04-27
125HNQ|1|K+5HNQ|1|LBase Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNAX-RAY DIFFRACTION2.42016-04-27
135HNQ|1|MBase Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplexsynthetic construct5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNA, 5fC modified RNAX-RAY DIFFRACTION2.42016-04-27

Release history

Release2.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.1052.1062.1072.1082.1092.1102.1112.1122.1132.1142.1152.1162.1172.1182.1192.1202.1212.1222.1232.1242.1252.1262.1272.1282.1292.1302.1312.1322.1332.1342.1352.1362.1372.1382.1392.1402.1412.1422.1432.1442.1452.1462.1472.1482.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.11
Date2016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-092016-12-162016-12-232016-12-302017-01-062017-01-132017-01-202017-01-272017-02-032017-02-102017-02-172017-02-242017-03-032017-03-102017-03-172017-03-242017-03-312017-04-112017-04-152017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-112017-06-212017-06-242017-06-282017-07-042017-07-102017-07-152017-07-262017-07-312017-08-052017-08-122017-08-192017-08-262017-09-032017-09-092017-09-162017-09-232017-09-302017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-01

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15HNQ|1|G+5HNQ|1|HBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
25HNQ|1|MBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
35HNQ|1|C+5HNQ|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
45HNQ|1|E+5HNQ|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
55HNQ|1|K+5HNQ|1|LBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
65HNJ|1|A+5HNJ|1|BBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.247
75HN2|1|E+5HN2|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.57
85HNQ|1|A+5HNQ|1|BBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
95HNJ|1|E+5HNJ|1|FBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.247
105HNQ|1|I+5HNQ|1|JBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION2.47
115HN2|1|C+5HN2|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.57
125HN2|1|B+5HN2|1|ABase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.59
135HNJ|1|C+5HNJ|1|DBase Pairing and Structure Insights into the 5-Formylcytosine in RNA DuplexX-RAY DIFFRACTION1.247