NR_3.5_19951.10

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4YCO\|1\|D (rep)	Transfer RNA	tRNAphe	Escherichia coli	Bacteria	RF00005	E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe	X-ray diffraction	2.1	2015-04-22
2	2ZXU\|1\|C	Transfer RNA	tRNA(Phe)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-ray diffraction	2.75	2009-05-26
3	2ZM5\|1\|C	Transfer RNA	tRNA(Phe)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-ray diffraction	2.55	2009-04-14
4	4YCO\|1\|E	Transfer RNA	tRNAphe	Escherichia coli	Bacteria	RF00005	E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe	X-ray diffraction	2.1	2015-04-22
5	3FOZ\|1\|C	Transfer RNA	tRNA(Phe)			RF00005	Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-ray diffraction	2.5	2009-01-20
6	3L0U\|1\|A	Transfer RNA	Unmodified tRNAPhe	Escherichia coli	Bacteria	RF00005	The crystal structure of unmodified tRNAPhe from Escherichia coli	X-ray diffraction	3	2010-03-16
7	4YCO\|1\|F	Transfer RNA	tRNAphe	Escherichia coli	Bacteria	RF00005	E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe	X-ray diffraction	2.1	2015-04-22
8	4V5E\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Insights into translational termination from the structure of RF2 bound to the ribosome	X-ray diffraction	3.45	2014-07-09
9	4V9D\|1\|BV	Transfer RNA	phenylalanine specific transfer RNA, messenger RNA	Escherichia coli	Bacteria	RF00005	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
10	3FOZ\|1\|D	Transfer RNA	tRNA(Phe)			RF00005	Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-ray diffraction	2.5	2009-01-20
11	3JCE\|1\|6	Transfer RNA	tRNA, mRNA	synthetic construct	Synthetic	RF00005	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
12	4V5D\|1\|AV	Transfer RNA	P AND A-SITE PHE-TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-ray diffraction	3.5	2014-07-09
13	4V5D\|1\|CV	Transfer RNA	P AND A-SITE PHE-TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-ray diffraction	3.5	2014-07-09
14	4V9C\|1\|AV	Transfer RNA	Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNA	Escherichia coli	Bacteria	RF00005	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
15	4V5Q\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
16	4WOI\|1\|DW	Transfer RNA	Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA	Escherichia coli	Bacteria	RF00005	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
17	4V5S\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
18	4V5L\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog	X-ray diffraction	3.1	2014-07-09
19	4V5P\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
20	4V5P\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
21	4Z3S\|1\|2w	Transfer RNA	A/E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
22	2ZM5\|1\|D	Transfer RNA	tRNA(Phe)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-ray diffraction	2.55	2009-04-14
23	4V6F\|1\|CC	Transfer RNA	TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA	Escherichia coli	Bacteria	RF00005	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-ray diffraction	3.1	2014-07-09
24	4V5J\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-ray diffraction	3.1	2014-07-09
25	4W2F\|1\|AW	Transfer RNA	A/P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
26	5AFI\|1\|y	Transfer RNA	A/T-site Phe-tRNAPhe, mRNA	Escherichia coli	Bacteria	RF00005	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
27	4V5R\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
28	4V5E\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Insights into translational termination from the structure of RF2 bound to the ribosome	X-ray diffraction	3.45	2014-07-09
29	4V5Q\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
30	4V5R\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
31	5DOY\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
32	2ZXU\|1\|D	Transfer RNA	tRNA(Phe)	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-ray diffraction	2.75	2009-05-26
33	4V6F\|1\|BC	Transfer RNA	TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA	Escherichia coli	Bacteria	RF00005	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-ray diffraction	3.1	2014-07-09
34	4Z3S\|1\|1w	Transfer RNA	A/E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
35	4Y4P\|1\|1w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
36	4V5S\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
37	4W2E\|1\|w	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2014-10-01
38	4V9H\|1\|AV	Transfer RNA	PE hybrid state tRNA Phe, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-ray diffraction	2.86	2014-07-09
39	1VY5\|1\|AW	Transfer RNA	A-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
40	4WQU\|1\|BW	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
41	4WQF\|1\|BW	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
42	4WQU\|1\|DW	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
43	4WQF\|1\|DW	Transfer RNA	P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
44	4V5J\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA	Escherichia coli	Bacteria	RF00005	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-ray diffraction	3.1	2014-07-09
45	4Z3S\|1\|1y	Transfer RNA	A/E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
46	5DOY\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
47	5DOY\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
48	4W2I\|1\|AW	Transfer RNA	A/P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
49	1VY4\|1\|AY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
50	4W2E\|1\|x	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2014-10-01
51	4Y4P\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
52	4W2G\|1\|AW	Transfer RNA	A/P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
53	1VY5\|1\|CW	Transfer RNA	A-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
54	4WPO\|1\|DW	Transfer RNA	A-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
55	4Y4P\|1\|2w	Transfer RNA	A-site and E-site tRNAs, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
56	4V6F\|1\|CB	Transfer RNA	TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA	Escherichia coli	Bacteria	RF00005	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-ray diffraction	3.1	2014-07-09
57	1VY4\|1\|AW	Transfer RNA	A-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
58	4V9D\|1\|AV	Transfer RNA	phenylalanine specific transfer RNA, messenger RNA	Escherichia coli	Bacteria	RF00005	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
59	4W2G\|1\|AY	Transfer RNA	A/P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
60	4W2F\|1\|AY	Transfer RNA	A/P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
61	4WQU\|1\|BY	Transfer RNA	P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
62	4WPO\|1\|BY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
63	4WQF\|1\|BY	Transfer RNA	P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
64	1VY4\|1\|CW	Transfer RNA	A-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
65	4W2G\|1\|CW	Transfer RNA	A/P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
66	4V6F\|1\|BB	Transfer RNA	TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA	Escherichia coli	Bacteria	RF00005	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-ray diffraction	3.1	2014-07-09
67	4V6F\|1\|BD	Transfer RNA	TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA	Escherichia coli	Bacteria	RF00005	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-ray diffraction	3.1	2014-07-09
68	4V6F\|1\|CD	Transfer RNA	TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA	Escherichia coli	Bacteria	RF00005	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-ray diffraction	3.1	2014-07-09
69	4Z3S\|1\|2y	Transfer RNA	A/E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-ray diffraction	2.65	2015-06-03
70	5DOY\|1\|2y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
71	4W2F\|1\|CY	Transfer RNA	A/P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
72	1VY4\|1\|CY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
73	4W2G\|1\|CY	Transfer RNA	A/P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
74	4V51\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
75	4Y4P\|1\|1y	Transfer RNA	A-site and E-site tRNAs	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
76	4W2I\|1\|AY	Transfer RNA	A/P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
77	1VY5\|1\|AY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
78	4W2I\|1\|CW	Transfer RNA	A/P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
79	4V9I\|1\|AW	Transfer RNA	E-SITE tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
80	4V5D\|1\|AW	Transfer RNA	E-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-ray diffraction	3.5	2014-07-09
81	4V5C\|1\|CW	Transfer RNA	E-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
82	4WPO\|1\|BW	Transfer RNA	A-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
83	4W2I\|1\|CY	Transfer RNA	A/P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
84	4WQU\|1\|DY	Transfer RNA	P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-ray diffraction	2.8	2015-01-28
85	4WPO\|1\|DY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-ray diffraction	2.8	2015-01-28
86	4WQF\|1\|DY	Transfer RNA	P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-ray diffraction	2.8	2015-01-28
87	4W2F\|1\|CW	Transfer RNA	A/P-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
88	4V5D\|1\|CW	Transfer RNA	E-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-ray diffraction	3.5	2014-07-09
89	4V51\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
90	1VY5\|1\|CY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
91	4WT1\|1\|3L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
92	4V5C\|1\|AW	Transfer RNA	E-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
93	4WSD\|1\|3L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
94	4V5Q\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
95	4V5E\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Insights into translational termination from the structure of RF2 bound to the ribosome	X-ray diffraction	3.45	2014-07-09
96	4WSD\|1\|1L	Transfer RNA	tRNA-Phe, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
97	4WSD\|1\|3K	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
98	4WT1\|1\|1K	Transfer RNA	tRNA-Phe, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
99	4WT1\|1\|1L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
100	4V5P\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
101	4V5R\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
102	4V5P\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
103	4V9I\|1\|CW	Transfer RNA	E-SITE tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
104	4WRO\|1\|1L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
105	4V5D\|1\|AY	Transfer RNA	P AND A-SITE PHE-TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-ray diffraction	3.5	2014-07-09
106	4V5J\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-ray diffraction	3.1	2014-07-09
107	4V5D\|1\|CY	Transfer RNA	P AND A-SITE PHE-TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-ray diffraction	3.5	2014-07-09
108	4V5L\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog	X-ray diffraction	3.1	2014-07-09
109	4V9C\|1\|CV	Transfer RNA	Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNA	Escherichia coli	Bacteria	RF00005	Allosteric control of the ribosome by small-molecule antibiotics	X-ray diffraction	3.3	2014-07-09
110	4WQR\|1\|3K	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-ray diffraction	3.15	2015-06-10
111	4WQR\|1\|3L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-ray diffraction	3.15	2015-06-10
112	3JCE\|1\|9	Transfer RNA	tRNA	synthetic construct	Synthetic	RF00005	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	Electron microscopy	3.2	2016-01-13
113	4V5S\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
114	4WOI\|1\|AX	Transfer RNA	Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA	Escherichia coli	Bacteria	RF00005	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
115	4V5R\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
116	4WQR\|1\|1K	Transfer RNA	tRNA-Phe, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-ray diffraction	3.15	2015-06-10
117	4V5C\|1\|CY	Transfer RNA	A-SITE PHE-TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
118	4WSD\|1\|1K	Transfer RNA	tRNA-Phe, mRNA	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-ray diffraction	2.95	2015-06-10
119	4WRO\|1\|1K	Transfer RNA	tRNA-Phe, RNA (30-MER)	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
120	4WRO\|1\|3K	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
121	4WRO\|1\|3L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
122	4V5J\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-ray diffraction	3.1	2014-07-09
123	4WZO\|1\|3K	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-fMet and mRNA	X-ray diffraction	3.3	2015-06-10
124	4V5Q\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-ray diffraction	3.1	2014-07-09
125	4WQR\|1\|1L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-ray diffraction	3.15	2015-06-10
126	4WZO\|1\|3L	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-fMet and mRNA	X-ray diffraction	3.3	2015-06-10
127	4W2H\|1\|AY	Transfer RNA	E-site tRNA Acceptor Stem	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
128	4WT1\|1\|3K	Transfer RNA	tRNA-Phe	Escherichia coli	Bacteria	RF00005	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
129	4V5E\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Insights into translational termination from the structure of RF2 bound to the ribosome	X-ray diffraction	3.45	2014-07-09
130	4V5C\|1\|AY	Transfer RNA	A-SITE PHE-TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
131	4V5S\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
132	1VY7\|1\|AY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
133	1VY7\|1\|CY	Transfer RNA	E-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
134	4W2H\|1\|CY	Transfer RNA	E-site tRNA Acceptor Stem	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15

Release history

Release	2.58	2.59
Date	2016-01-15	2016-01-22

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.5_19951.10	NR_all_19951.9	2.58	(132) 4V6F\|1\|BC, 4V5D\|1\|AW, 4W2G\|1\|CY, 4WZO\|1\|3L, 4V5Q\|1\|CV, 2ZXU\|1\|D, 4V9I\|1\|AW, 4WRO\|1\|1L, 4V5J\|1\|AW, 4Z3S\|1\|1y, 4V6F\|1\|BB, 4WQF\|1\|DW, 1VY4\|1\|AY, 4V5C\|1\|CY, 4WT1\|1\|3L, 4W2I\|1\|AY, 2ZM5\|1\|D, 4V5R\|1\|CV, 4WRO\|1\|1K, 4W2F\|1\|AW, 4V5L\|1\|AW, 4WQF\|1\|BY, 1VY4\|1\|AW, 4V6F\|1\|CC, 4V5D\|1\|CW, 4W2I\|1\|AW, 4Y4P\|1\|2w, 4V5R\|1\|AW, 3FOZ\|1\|D, 4W2E\|1\|x, 4WSD\|1\|1K, 4V5J\|1\|CW, 5AFI\|1\|y, 4V6F\|1\|BD, 4WQR\|1\|1L, 1VY5\|1\|AW, 4V5D\|1\|AY, 4Y4P\|1\|1w, 4V5Q\|1\|CW, 4WOI\|1\|AX, 3FOZ\|1\|C, 4WRO\|1\|3L, 4W2F\|1\|CY, 4Z3S\|1\|2y, 4WQR\|1\|1K, 1VY4\|1\|CY, 4V9C\|1\|CV, 4V5E\|1\|AW, 4W2I\|1\|CY, 4V5S\|1\|AV, 4V51\|1\|CW, 4W2F\|1\|CW, 4WSD\|1\|3L, 4V5P\|1\|AV, 1VY5\|1\|CY, 5DOY\|1\|2w, 4V6F\|1\|CD, 4WQU\|1\|BW, 4V5D\|1\|CY, 4Y4P\|1\|2y, 4WPO\|1\|BY, 4V51\|1\|AW, 4WSD\|1\|3K, 4W2G\|1\|CW, 1VY5\|1\|CW, 5DOY\|1\|1y, 4WQR\|1\|3L, 4V9H\|1\|AV, 4WPO\|1\|BW, 4V5S\|1\|CW, 4V5C\|1\|CW, 4W2G\|1\|AY, 4V5P\|1\|CW, 2ZM5\|1\|C, 4V9D\|1\|AV, 4WQU\|1\|DY, 4V5E\|1\|CV, 4YCO\|1\|F, 4V5S\|1\|AW, 4WQF\|1\|BW, 4V5C\|1\|AY, 4WT1\|1\|1L, 4V5P\|1\|CV, 4W2H\|1\|CY, 1VY7\|1\|CY, 4WQU\|1\|DW, 4W2E\|1\|w, 4YCO\|1\|E, 4WPO\|1\|DY, 4WT1\|1\|1K, 4W2H\|1\|AY, 4WQU\|1\|BY, 4Z3S\|1\|2w, 4WQF\|1\|DY,	(2) 3JCE\|1\|6, 3JCE\|1\|9	(24) 4V7C\|1\|AV, 4V5G\|1\|AW, 4V4Y\|1\|AD, 3J46\|1\|a, 4V97\|1\|AW, 4V6L\|1\|AB, 4V4Y\|1\|AB, 4V8J\|1\|AW, 4V6K\|1\|BB, 4V7D\|1\|BV, 4V5G\|1\|CW, 4P6F\|1\|XW, 4V69\|1\|AW, 4V4I\|1\|z, 4P6F\|1\|QW, 4V7D\|1\|BW, 4V7C\|1\|AW, 4V5G\|1\|CV, 4V97\|1\|CW, 4V6L\|1\|AE, 4V5G\|1\|AV, 4V4Y\|1\|AC, 4V8J\|1\|CW, 4V6K\|1\|BE

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5AFI\|1\|y	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	67
2	3JCE\|1\|6	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	75
3	4YCO\|1\|E	E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe	X-RAY DIFFRACTION	2.1	67
4	4YCO\|1\|D	E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe	X-RAY DIFFRACTION	2.1	74
5	4YCO\|1\|F	E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe	X-RAY DIFFRACTION	2.1	71
6	4WQF\|1\|DW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	69
7	4WQU\|1\|DW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	69
8	4V6F\|1\|BC	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-RAY DIFFRACTION	3.1	75
9	4V6F\|1\|CC	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-RAY DIFFRACTION	3.1	75
10	4V9D\|1\|BV	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	76
11	4V9C\|1\|AV	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	76
12	4WOI\|1\|DW	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	76
13	4V5Q\|1\|CV	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
14	4V5S\|1\|CV	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
15	4V5L\|1\|AV	The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog	X-RAY DIFFRACTION	3.1	76
16	4V5S\|1\|AV	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
17	4V5Q\|1\|AV	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
18	4V5P\|1\|AV	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
19	4V5P\|1\|CV	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
20	4V5R\|1\|CV	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
21	4V5R\|1\|AV	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
22	4V5E\|1\|CV	Insights into translational termination from the structure of RF2 bound to the ribosome	X-RAY DIFFRACTION	3.45	76
23	4V5E\|1\|AV	Insights into translational termination from the structure of RF2 bound to the ribosome	X-RAY DIFFRACTION	3.45	76
24	4V5J\|1\|CV	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-RAY DIFFRACTION	3.1	75
25	4V5D\|1\|AV	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-RAY DIFFRACTION	3.5	75
26	4V5J\|1\|AV	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-RAY DIFFRACTION	3.1	75
27	4V5D\|1\|CV	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-RAY DIFFRACTION	3.5	75
28	4W2E\|1\|w	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	68
29	4WQF\|1\|BW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	69
30	4WQU\|1\|BW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	69
31	5DOY\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	68
32	4Z3S\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	67
33	4Z3S\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	66
34	5DOY\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
35	4WQR\|1\|1L	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-RAY DIFFRACTION	3.15	73
36	4WRO\|1\|1L	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	68
37	4WSD\|1\|1L	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	72
38	4WT1\|1\|1L	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	76
39	4V6F\|1\|BB	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-RAY DIFFRACTION	3.1	75
40	4V6F\|1\|CB	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-RAY DIFFRACTION	3.1	75
41	4WQR\|1\|1K	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-RAY DIFFRACTION	3.15	73
42	4WT1\|1\|1K	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	69
43	4WSD\|1\|1K	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	70
44	4WRO\|1\|1K	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	67
45	4W2I\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	67
46	4WPO\|1\|BW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	66
47	1VY4\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	66
48	1VY5\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	66
49	4Y4P\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	67
50	4W2F\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	67
51	4W2G\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	67
52	4WPO\|1\|DW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	64
53	1VY4\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	64
54	4W2I\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	65
55	1VY5\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	64
56	4W2G\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	65
57	4W2F\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	65
58	4Y4P\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	65
59	4V5D\|1\|CY	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-RAY DIFFRACTION	3.5	75
60	4V5C\|1\|AY	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	75
61	4V5C\|1\|CY	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	75
62	4V5D\|1\|AY	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-RAY DIFFRACTION	3.5	75
63	3JCE\|1\|9	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)	ELECTRON MICROSCOPY	3.2	76
64	4Y4P\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	66
65	4W2F\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	66
66	5DOY\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	66
67	4Z3S\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	66
68	4WPO\|1\|DY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	66
69	4WQU\|1\|DY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	66
70	4WQF\|1\|DY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	66
71	1VY4\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	66
72	1VY5\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	66
73	4W2I\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	66
74	4W2G\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	66
75	4W2H\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	18
76	4W2G\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	67
77	4W2I\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	67
78	1VY5\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	67
79	1VY4\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	67
80	4W2E\|1\|x	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	67
81	4WQF\|1\|BY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state	X-RAY DIFFRACTION	2.8	67
82	4WQU\|1\|BY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin	X-RAY DIFFRACTION	2.8	67
83	4WPO\|1\|BY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state	X-RAY DIFFRACTION	2.8	67
84	4W2F\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	67
85	4Y4P\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	67
86	5DOY\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
87	4Z3S\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution	X-RAY DIFFRACTION	2.65	67
88	4V5D\|1\|AW	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-RAY DIFFRACTION	3.5	76
89	4V5C\|1\|CW	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	76
90	4V5C\|1\|AW	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	76
91	4V5D\|1\|CW	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.	X-RAY DIFFRACTION	3.5	76
92	4V51\|1\|AW	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
93	4V51\|1\|CW	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
94	4V5E\|1\|CW	Insights into translational termination from the structure of RF2 bound to the ribosome	X-RAY DIFFRACTION	3.45	76
95	4V9I\|1\|AW	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	76
96	4V9I\|1\|CW	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	76
97	4V5J\|1\|CW	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-RAY DIFFRACTION	3.1	75
98	4V5J\|1\|AW	Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release	X-RAY DIFFRACTION	3.1	75
99	4V5E\|1\|AW	Insights into translational termination from the structure of RF2 bound to the ribosome	X-RAY DIFFRACTION	3.45	76
100	4V5Q\|1\|CW	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
101	4V5S\|1\|CW	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
102	4V5R\|1\|AW	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
103	4V5R\|1\|CW	The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
104	4V5P\|1\|CW	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
105	4V5P\|1\|AW	The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
106	4V5S\|1\|AW	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.	X-RAY DIFFRACTION	3.1	76
107	4V5Q\|1\|AW	The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome	X-RAY DIFFRACTION	3.1	76
108	4V5L\|1\|AW	The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog	X-RAY DIFFRACTION	3.1	76
109	4V6F\|1\|CD	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-RAY DIFFRACTION	3.1	75
110	4WSD\|1\|3K	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	72
111	4WQR\|1\|3K	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-RAY DIFFRACTION	3.15	76
112	4WT1\|1\|3K	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	76
113	4WRO\|1\|3K	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	68
114	4WZO\|1\|3K	Complex of 70S ribosome with tRNA-fMet and mRNA	X-RAY DIFFRACTION	3.3	70
115	4WZO\|1\|3L	Complex of 70S ribosome with tRNA-fMet and mRNA	X-RAY DIFFRACTION	3.3	70
116	4WRO\|1\|3L	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	68
117	4WQR\|1\|3L	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.	X-RAY DIFFRACTION	3.15	76
118	4WT1\|1\|3L	Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	76
119	4WSD\|1\|3L	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.	X-RAY DIFFRACTION	2.95	71
120	4V6F\|1\|BD	Elongation complex of the 70S ribosome with three tRNAs and mRNA.	X-RAY DIFFRACTION	3.1	75
121	4V9H\|1\|AV	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-RAY DIFFRACTION	2.86	74
122	4V9D\|1\|AV	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	76
123	3L0U\|1\|A	The crystal structure of unmodified tRNAPhe from Escherichia coli	X-RAY DIFFRACTION	3	73
124	4WOI\|1\|AX	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	76
125	4V9C\|1\|CV	Allosteric control of the ribosome by small-molecule antibiotics	X-RAY DIFFRACTION	3.3	76
126	2ZM5\|1\|D	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-RAY DIFFRACTION	2.55	69
127	2ZXU\|1\|D	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-RAY DIFFRACTION	2.75	69
128	3FOZ\|1\|C	Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-RAY DIFFRACTION	2.5	74
129	2ZXU\|1\|C	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-RAY DIFFRACTION	2.75	74
130	2ZM5\|1\|C	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-RAY DIFFRACTION	2.55	74
131	4W2H\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	5
132	1VY7\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	5
133	1VY7\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	5
134	3FOZ\|1\|D	Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-RAY DIFFRACTION	2.5	69

Equivalence class NR_3.5_19951.10 Obsolete

Release history

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