Equivalence class NR_3.5_21736.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4OQ9|1|z (rep) | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 2 | 4NIA|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 3 | 4OQ9|1|1 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 4 | 4NIA|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 5 | 4OQ9|1|2 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 6 | 4NIA|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 7 | 4OQ9|1|3 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 8 | 4NIA|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 9 | 4OQ9|1|4 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 10 | 4NIA|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 11 | 4OQ9|1|5 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 12 | 4NIA|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 13 | 4OQ9|1|6 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 14 | 4NIA|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 15 | 4OQ9|1|7 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 16 | 4NIA|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 17 | 4OQ9|1|8 | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 18 | 3ER9|1|D | 5'-R(UP*U)-3' | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-ray diffraction | 2.06 | 2009-06-16 | ||||
| 19 | 4OQ8|1|D | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 20 | 2VRT|1|E | 5'-R(*UP*UP)-3' | Escherichia coli | Bacteria | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | ||
| 21 | 1DDL|1|E | RNA (5'-R(P*UP*U)-3') | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-ray diffraction | 2.7 | 2000-10-30 | ||||
| 22 | 2VRT|1|F | 5'-R(*UP*UP)-3' | Escherichia coli | Bacteria | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-ray diffraction | 3.5 | 2008-07-22 | ||
| 23 | 4NIA|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 24 | 4OQ9|1|t | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 25 | 4NIA|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 26 | 4OQ9|1|u | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 27 | 4NIA|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 28 | 4OQ9|1|v | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 29 | 4NIA|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 30 | 4OQ9|1|w | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 31 | 4NIA|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 32 | 4OQ9|1|x | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 33 | 4NIA|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 | ||
| 34 | 4OQ9|1|y | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-ray diffraction | 1.45 | 2014-09-10 | ||
| 35 | 4NIA|1|z | RNA (5'-R(P*UP*U)-3') | Tobacco virtovirus 1 | Viruses | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-ray diffraction | 1.82 | 2014-09-10 |
Release history
| Release | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_21736.2 | NR_all_21736.1 | 2.46 | (33) 4NIA|1|3, 4OQ9|1|3, 4NIA|1|2, 4OQ9|1|2, 4NIA|1|1, 4OQ9|1|1, 3ER9|1|D, 4OQ8|1|D, 1DDL|1|E, 4NIA|1|z, 4OQ9|1|z, 4NIA|1|y, 4OQ9|1|y, 4NIA|1|x, 4OQ9|1|x, 4NIA|1|w, 4OQ9|1|w, 4NIA|1|v, 4OQ9|1|v, 4NIA|1|u, 4OQ9|1|u, 4NIA|1|t, 4OQ9|1|t, 4NIA|1|8, 4OQ9|1|8, 4NIA|1|7, 4OQ9|1|7, 4NIA|1|6, 4OQ9|1|6, 4NIA|1|5, 4OQ9|1|5, 4NIA|1|4, 4OQ9|1|4 | (2) 2VRT|1|E, 2VRT|1|F | (0) |
| NR_3.5_21736.2 | NR_all_53732.1 | 2.46 | (2) 2VRT|1|F, 2VRT|1|E | (33) 4NIA|1|4, 4NIA|1|5, 4NIA|1|3, 4NIA|1|2, 4NIA|1|1, 3ER9|1|D, 1DDL|1|E, 4OQ9|1|z, 4OQ9|1|y, 4OQ9|1|x, 4OQ9|1|w, 4OQ9|1|v, 4OQ9|1|u, 4OQ9|1|t, 4OQ9|1|8, 4OQ9|1|7, 4OQ9|1|6, 4OQ9|1|5, 4OQ9|1|4, 4OQ9|1|3, 4OQ9|1|2, 4OQ9|1|1, 4OQ8|1|D, 4NIA|1|z, 4NIA|1|y, 4NIA|1|x, 4NIA|1|w, 4NIA|1|v, 4NIA|1|u, 4NIA|1|t, 4NIA|1|8, 4NIA|1|7, 4NIA|1|6 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_21736.2 | NR_3.5_21736.3 | 2.99 | (35) 4NIA|1|1, 4NIA|1|t, 4OQ9|1|1, 4OQ9|1|t, 3ER9|1|D, 4NIA|1|8, 4OQ8|1|D, 4OQ9|1|8, 2VRT|1|F, 4NIA|1|7, 4NIA|1|z, 4OQ9|1|7, 4OQ9|1|z, 4NIA|1|6, 4NIA|1|y, 4OQ9|1|6, 4OQ9|1|y, 2VRT|1|E, 4NIA|1|5, 4NIA|1|x, 4OQ9|1|5, 4OQ9|1|x, 1DDL|1|E, 4NIA|1|4, 4NIA|1|w, 4OQ9|1|4, 4OQ9|1|w, 4NIA|1|3, 4NIA|1|v, 4OQ9|1|3, 4OQ9|1|v, 4NIA|1|2, 4NIA|1|u, 4OQ9|1|2, 4OQ9|1|u | (0) | (2) 5KAL|1|Z, 5KAL|1|Y |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4NIA|1|w | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 2 | 4OQ9|1|3 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 3 | 1DDL|1|E | DESMODIUM YELLOW MOTTLE TYMOVIRUS | X-RAY DIFFRACTION | 2.7 | 2 |
| 4 | 4NIA|1|7 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 5 | 4NIA|1|8 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 6 | 4NIA|1|y | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 7 | 4OQ9|1|8 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 8 | 4NIA|1|u | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 9 | 4OQ9|1|7 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 10 | 4OQ9|1|y | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 11 | 4OQ9|1|u | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 12 | 3ER9|1|D | Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATP | X-RAY DIFFRACTION | 2.06 | 2 |
| 13 | 4OQ9|1|6 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 14 | 4NIA|1|6 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 15 | 4NIA|1|5 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 16 | 2VRT|1|F | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 |
| 17 | 2VRT|1|E | Crystal Structure of E. coli RNase E possessing M1 RNA fragments - Catalytic Domain | X-RAY DIFFRACTION | 3.5 | 2 |
| 18 | 4OQ9|1|1 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 19 | 4OQ9|1|5 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 20 | 4NIA|1|1 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 21 | 4NIA|1|4 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 22 | 4NIA|1|z | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 23 | 4OQ9|1|4 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 24 | 4OQ9|1|z | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 25 | 4NIA|1|2 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 26 | 4OQ9|1|x | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 27 | 4OQ8|1|D | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 28 | 4NIA|1|v | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 29 | 4NIA|1|3 | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 30 | 4OQ9|1|w | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 31 | 4OQ9|1|t | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 32 | 4NIA|1|x | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 33 | 4NIA|1|t | Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS Restraints | X-RAY DIFFRACTION | 1.82 | 2 |
| 34 | 4OQ9|1|2 | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |
| 35 | 4OQ9|1|v | Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints | X-RAY DIFFRACTION | 1.45 | 2 |