#IFECompound(s)RNA source organismTitleMethodResolutionDate
13IGI|1|A (rep)Group IIC intron, 5'-R(*CP*GP*CP*UP*CP*UP*AP*CP*UP*CP*UP*AP*U)-3'Tertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-RAY DIFFRACTION3.122009-12-22
25J02|1|AGROUP II INTRON LARIAT, 5' EXON ANALOG (5'-R(*CP*UP*GP*UP*UP*AP*(5MU))-3')Oceanobacillus iheyensisStructure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.X-RAY DIFFRACTION3.492016-12-14
34FAX|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-RAY DIFFRACTION3.12012-11-14
44FAR|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.862012-11-14
54E8N|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.962012-11-14
66T3S|1|AGroup IIC Intron RibozymeOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exonX-RAY DIFFRACTION3.282020-05-13
74FAU|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.872012-11-14
84FB0|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.222012-11-14
94E8K|1|AGroup IIC intron, 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-RAY DIFFRACTION3.032012-11-14
104E8Q|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.842012-11-14
114Y1O|1|Agroup II intron, domain 1Oceanobacillus iheyensisOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.952015-10-14
124Y1O|1|Bgroup II intron, domain 1Oceanobacillus iheyensisOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.952015-10-14
136T3N|1|AGroup IIC Intron RibozymeOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exonX-RAY DIFFRACTION3.222020-05-13
144E8P|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-RAY DIFFRACTION3.282012-11-14
154E8T|1|AGroup IIC intron, 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-RAY DIFFRACTION3.342012-11-14
165J01|1|Agroup II intron lariatOceanobacillus iheyensisStructure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.X-RAY DIFFRACTION3.392016-12-14
174FAW|1|AGroup IIC intron, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.72012-11-14
183EOH|1|AGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'Refined group II intron structureX-RAY DIFFRACTION3.122008-10-28
194FAQ|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-RAY DIFFRACTION3.112012-11-14
204E8R|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-RAY DIFFRACTION3.362012-11-14
214Y1N|1|Bgroup II intron, domain 1Oceanobacillus iheyensisOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION32015-10-14
223G78|1|AGroup II intron, Ligated EXON productOceanobacillus iheyensisInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.82010-02-16
234E8M|1|AGroup IIC intronOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.52012-11-14
246T3K|1|AGroup IIC Intron RibozymeOceanobacillus iheyensisStructure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION3.442020-05-13
254Y1N|1|Agroup II intron, domain 1Oceanobacillus iheyensisOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION32015-10-14
263EOG|1|AGroup IIC intron, 5'-R(*UP*UP*AP*UP*UP*A)-3'Co-crystallization showing exon recognition by a group II intronX-RAY DIFFRACTION3.392008-10-28
273BWP|1|AGroup IIC intronCrystal structure of a self-spliced group II intronX-RAY DIFFRACTION3.12008-04-15

Release history

Release3.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.207
Date2020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-01

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15J01|1|AStructure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+ and MG2+.X-RAY DIFFRACTION3.39414
25J02|1|AStructure of the lariat form of a chimeric derivative of the Oceanobacillus iheyensis group II intron in the presence of NH4+, MG2+ and an inactive 5' exon.X-RAY DIFFRACTION3.49414
33EOG|1|ACo-crystallization showing exon recognition by a group II intronX-RAY DIFFRACTION3.39388
43BWP|1|ACrystal structure of a self-spliced group II intronX-RAY DIFFRACTION3.1356
53EOH|1|ARefined group II intron structureX-RAY DIFFRACTION3.12381
63G78|1|AInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8389
73IGI|1|ATertiary Architecture of the Oceanobacillus Iheyensis Group II IntronX-RAY DIFFRACTION3.12389
84E8T|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)X-RAY DIFFRACTION3.34388
94E8K|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrateX-RAY DIFFRACTION3.03388
104FAQ|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exonX-RAY DIFFRACTION3.11396
114FAU|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87395
124FAR|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
136T3K|1|AStructure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION3.44390
144FAW|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7390
154E8M|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.5394
164FB0|1|AStructure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+X-RAY DIFFRACTION3.22393
174E8N|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
184E8Q|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
194E8P|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+X-RAY DIFFRACTION3.28393
204E8R|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+X-RAY DIFFRACTION3.36393
214FAX|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+X-RAY DIFFRACTION3.1392
226T3S|1|AStructure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exonX-RAY DIFFRACTION3.28393
236T3N|1|AStructure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exonX-RAY DIFFRACTION3.22394
244Y1O|1|BOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95256
254Y1N|1|AOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3249
264Y1N|1|BOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3259
274Y1O|1|AOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95258