Equivalence class NR_3.5_52453.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3OL9|1|B+ 3OL9|1|F+ 3OL9|1|C+ 3OL9|1|G+ 3OL9|1|D+ 3OL9|1|H (rep) | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(O2C))-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-ray diffraction | 2.25 | 2010-12-22 | ||||
| 2 | 3OL9|1|J+ 3OL9|1|N+ 3OL9|1|K+ 3OL9|1|O+ 3OL9|1|L+ 3OL9|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*(O2C))-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-ray diffraction | 2.25 | 2010-12-22 | ||||
| 3 | 3OLB|1|J+ 3OLB|1|N+ 3OLB|1|K+ 3OLB|1|O+ 3OLB|1|L+ 3OLB|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*U*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-ray diffraction | 2.41 | 2010-12-22 | ||||
| 4 | 3OLB|1|B+ 3OLB|1|F+ 3OLB|1|C+ 3OLB|1|G+ 3OLB|1|D+ 3OLB|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*U*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-ray diffraction | 2.41 | 2010-12-22 | ||||
| 5 | 3OL6|1|B+ 3OL6|1|F+ 3OL6|1|C+ 3OL6|1|G+ 3OL6|1|D+ 3OL6|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex | X-ray diffraction | 2.5 | 2010-12-22 | ||||
| 6 | 3OL6|1|J+ 3OL6|1|N+ 3OL6|1|K+ 3OL6|1|O+ 3OL6|1|L+ 3OL6|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex | X-ray diffraction | 2.5 | 2010-12-22 | ||||
| 7 | 3OL8|1|B+ 3OL8|1|F+ 3OL8|1|C+ 3OL8|1|G+ 3OL8|1|D+ 3OL8|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP-Mn | X-ray diffraction | 2.75 | 2010-12-22 | ||||
| 8 | 3OL7|1|J+ 3OL7|1|N+ 3OL7|1|K+ 3OL7|1|O+ 3OL7|1|L+ 3OL7|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP | X-ray diffraction | 2.7 | 2010-12-22 | ||||
| 9 | 3OL7|1|B+ 3OL7|1|F+ 3OL7|1|C+ 3OL7|1|G+ 3OL7|1|D+ 3OL7|1|H | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP | X-ray diffraction | 2.7 | 2010-12-22 | ||||
| 10 | 3OL8|1|J+ 3OL8|1|N+ 3OL8|1|K+ 3OL8|1|O+ 3OL8|1|L+ 3OL8|1|P | RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3'), RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*AP*C)-3'), RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') | Poliovirus polymerase elongation complex with CTP-Mn | X-ray diffraction | 2.75 | 2010-12-22 |
Release history
| Release | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 |
Parents
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3OL9|1|B+3OL9|1|F+3OL9|1|C+3OL9|1|G+3OL9|1|D+3OL9|1|H | Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-RAY DIFFRACTION | 2.25 | 18 |
| 2 | 3OLB|1|J+3OLB|1|N+3OLB|1|K+3OLB|1|O+3OLB|1|L+3OLB|1|P | Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-RAY DIFFRACTION | 2.41 | 19 |
| 3 | 3OLB|1|B+3OLB|1|F+3OLB|1|C+3OLB|1|G+3OLB|1|D+3OLB|1|H | Poliovirus polymerase elongation complex with 2',3'-dideoxy-ctp | X-RAY DIFFRACTION | 2.41 | 18 |
| 4 | 3OL6|1|J+3OL6|1|N+3OL6|1|K+3OL6|1|O+3OL6|1|L+3OL6|1|P | Poliovirus polymerase elongation complex | X-RAY DIFFRACTION | 2.5 | 19 |
| 5 | 3OL9|1|J+3OL9|1|N+3OL9|1|K+3OL9|1|O+3OL9|1|L+3OL9|1|P | Poliovirus polymerase elongation complex with 3'-deoxy-CTP | X-RAY DIFFRACTION | 2.25 | 19 |
| 6 | 3OL7|1|J+3OL7|1|N+3OL7|1|K+3OL7|1|O+3OL7|1|L+3OL7|1|P | Poliovirus polymerase elongation complex with CTP | X-RAY DIFFRACTION | 2.7 | 16 |
| 7 | 3OL8|1|J+3OL8|1|N+3OL8|1|K+3OL8|1|O+3OL8|1|L+3OL8|1|P | Poliovirus polymerase elongation complex with CTP-Mn | X-RAY DIFFRACTION | 2.75 | 17 |
| 8 | 3OL8|1|B+3OL8|1|F+3OL8|1|C+3OL8|1|G+3OL8|1|D+3OL8|1|H | Poliovirus polymerase elongation complex with CTP-Mn | X-RAY DIFFRACTION | 2.75 | 17 |
| 9 | 3OL7|1|B+3OL7|1|F+3OL7|1|C+3OL7|1|G+3OL7|1|D+3OL7|1|H | Poliovirus polymerase elongation complex with CTP | X-RAY DIFFRACTION | 2.7 | 18 |
| 10 | 3OL6|1|B+3OL6|1|F+3OL6|1|C+3OL6|1|G+3OL6|1|D+3OL6|1|H | Poliovirus polymerase elongation complex | X-RAY DIFFRACTION | 2.5 | 18 |
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