Equivalence class NR_3.5_54635.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5F9H|1|L (rep) | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 2 | 5F9H|1|B | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 3 | 5F9H|1|D | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 4 | 5F9H|1|F | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 5 | 5F9H|1|H | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 | ||
| 6 | 5F9H|1|J | RNA (5'-R(P*AP*AP*UP*AP*UP*AP*AP*UP*AP*GP*UP*GP*AP*UP*AP*UP*UP*AP*UP*AP*UP*UP*C)-3') | synthetic construct | Synthetic | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-ray diffraction | 3.1 | 2016-01-13 |
Release history
| Release | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_54635.1 | NR_3.5_67726.2 | 2.93 | (6) 5F9H|1|J, 5F9H|1|L, 5F9H|1|B, 5F9H|1|D, 5F9H|1|H, 5F9H|1|F | (0) | (12) 5F9F|1|B, 5F9F|1|J, 5F98|1|F, 5F98|1|L, 5F9F|1|H, 5F98|1|D, 5F98|1|J, 5F9F|1|F, 5F98|1|B, 5F98|1|H, 5F9F|1|D, 5F9F|1|L |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5F9H|1|F | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 |
| 2 | 5F9H|1|L | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 |
| 3 | 5F9H|1|J | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 |
| 4 | 5F9H|1|B | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 |
| 5 | 5F9H|1|H | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 |
| 6 | 5F9H|1|D | Crystal structure of RIG-I helicase-RD in complex with 24-mer 5' triphosphate hairpin RNA | X-RAY DIFFRACTION | 3.1 | 23 |