#IFECompound(s)RNA source organismTitleMethodResolutionDate
15J7L|1|AA (rep)16S rRNAEscherichia coliStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32016-07-27
24YBB|1|AA16S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
35J8A|1|AA16S rRNAEscherichia coliStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.12016-07-06
45JC9|1|AA16S rRNAEscherichia coliStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.032016-07-06
54WOI|1|DA16S ribosomal RNA, Messenger RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
64WOI|1|AA16S ribosomal RNA, Messenger RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
75IT8|1|AA16S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.122016-07-27
84V9P|1|FA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
94V9O|1|BA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
105J7L|1|BA16S rRNAEscherichia coliStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32016-07-27
114V9P|1|HA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
124V9P|1|DA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
134V9P|1|BA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
145J8A|1|BA16S rRNAEscherichia coliStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.12016-07-06
154V9O|1|FA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
165J91|1|AA16S rRNAEscherichia coliStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962016-07-06
176I7V|1|AA16S ribosmal RNAEscherichia coliRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92018-12-05
184V6C|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
195JC9|1|BA16S rRNAEscherichia coliStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.032016-07-06
204V52|1|CA16S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
214V9O|1|DA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
224V7T|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
234V57|1|CA16S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
244WWW|1|QA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
256LKQ|1|s16S ribosomal RNAEscherichia coliThe Structural Basis for Inhibition of Ribosomal Translocation by ViomycinX-RAY DIFFRACTION3.12020-05-06
264V52|1|AA16S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
274V57|1|AA16S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
284U27|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
295J88|1|AA16S rRNAEscherichia coliStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.322016-07-06
304V7V|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
314V54|1|CA16S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
324WF1|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
334YBB|1|BA16S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
344U1U|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
354V64|1|CA16S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
364U26|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
374V9D|1|AA16S rRNA, messenger RNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
386I7V|1|BA16S ribosomal RNAEscherichia coliRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92018-12-05
394U24|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
404V7S|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
414U25|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
425IT8|1|BA16S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.122016-07-27
434V9D|1|BA16S rRNA, messenger RNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
444V54|1|AA16S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
454U27|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
464V64|1|AA16S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
474V7U|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
484V50|1|CA16S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
494V9O|1|HA16S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
504WWW|1|XA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
514V4Q|1|CA16S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
524U20|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
534U1U|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
544V50|1|AA16S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
554U1V|1|AA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
564U25|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
574V6C|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
585J88|1|BA16S rRNAEscherichia coliStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.322016-07-06
594V4Q|1|AA16S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
604U26|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
614V85|1|AA16S rRNACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22014-07-09
625J91|1|BA16S rRNAEscherichia coliStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962016-07-06
634V7T|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
644WF1|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
654U24|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
664U1V|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
674U20|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
684V7S|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
694V7V|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
704V9C|1|CA16S ribosomal RNA, Messenger RNA, mRNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
714V9C|1|AA16S ribosomal RNA, Messenger RNA, mRNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
724V7U|1|CA16S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
735J5B|1|AA16S rRNAEscherichia coliStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82016-07-27
744V4H|1|CA16S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
754V4H|1|AA16S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
765J5B|1|BA16S rRNAEscherichia coliStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82016-07-27
777K00|1|A16S rRNAEscherichia coliStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.982020-09-23
786YSS|1|a16S ribosomal RNAEscherichia coliStructure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateELECTRON MICROSCOPY2.62020-08-19
796XZB|1|A116S rRNAEscherichia coli K-12E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.542020-11-04
806TC3|1|16S116S rRNAEscherichia coliCryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.72020-01-01
816TBV|1|16S116S rRNAEscherichia coliCryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.72020-01-01
826XZA|1|A116S rRNAEscherichia coli K-12E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.662020-11-04
836Y69|1|a16S ribosomal RNAEscherichia coliCryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.862020-07-01
845AFI|1|a16S ribosomal RNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
855NWY|1|016S rRNAEscherichia coli2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.92017-07-19
866WD0|1|316S ribosomal RNA, mRNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY32020-07-01
876H4N|1|a16S ribosomal RNAEscherichia coliStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY32018-09-05
886WDE|1|316S ribosomal RNA, mRNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY32020-07-01
896ORE|1|216S ribosomal RNAEscherichia coliRelease complex 70SELECTRON MICROSCOPY2.92019-06-19
905H5U|1|h16S rRNAEscherichia coliMechanistic insights into the alternative translation termination by ArfA and RF2ELECTRON MICROSCOPY3.012017-01-25
915WDT|1|a16S rRNAEscherichia coli70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY32018-04-25
925WFS|1|a16S rRNAEscherichia coli70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY32018-05-02
936SZS|1|a16S ribosomal RNAEscherichia coliRelease factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisELECTRON MICROSCOPY3.062019-12-04
945MDV|1|216S ribosomal RNAEscherichia coliStructure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.972016-12-14
955MGP|1|a16S ribosomal RNAEscherichia coliStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.12016-12-14
966ENU|1|a16S ribosomal RNAEscherichia coliPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.12017-11-22
975WE4|1|a16S rRNAEscherichia coli70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.12018-04-25
986YSR|1|a16S ribosomal RNAEscherichia coliStructure of the P+9 stalled ribosome complexELECTRON MICROSCOPY3.12020-08-19
996ZTP|1|AA16S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in uncoupled state 6ELECTRON MICROSCOPY32020-09-16
1006ZTO|1|AA16S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in uncoupled state 1ELECTRON MICROSCOPY32020-09-23
1016ZU1|1|AA16S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in uncoupled state 2ELECTRON MICROSCOPY32020-09-16
1026X7K|1|D16S rRNAEscherichia coliCryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.12020-09-02
1036OM6|1|216S ribosomal RNAEscherichia coliStructure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNAELECTRON MICROSCOPY3.12021-02-10
1046ENF|1|a16S ribosomal RNAEscherichia coliCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.22017-11-22
1055U9G|1|A16S ribosomal RNA, truncated mRNAEscherichia coli3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)ELECTRON MICROSCOPY3.22017-03-22
1066WNW|1|316S ribosomal RNAEscherichia coliActive 70S ribosome without free 5S rRNA and bound with A- and P- tRNAELECTRON MICROSCOPY3.22020-06-24
1075U9F|1|A16S ribosomal RNA, truncated mRNAEscherichia coli3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)ELECTRON MICROSCOPY3.22017-03-22
1086WDD|1|316S ribosomal RNA, mRNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A)ELECTRON MICROSCOPY3.22020-07-01
1093JCE|1|a16S ribosomal RNAEscherichia coliStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.22016-01-13
1105UYM|1|A16S ribosomal RNA, mRNAEscherichia coli70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.22017-06-07
1116YST|1|a16S ribosomal RNAEscherichia coliStructure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis stateELECTRON MICROSCOPY3.22020-08-19
1126X6T|1|D16S rRNAEscherichia coliCryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.22020-09-02
1135MDW|1|216S ribosomal RNAEscherichia coliStructure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.062016-12-14
1145MDZ|1|216S ribosomal RNAEscherichia coliStructure of the 70S ribosome (empty A site)ELECTRON MICROSCOPY3.12016-12-14
1156C4I|1|a16S rRNAEscherichia coliConformation of methylated GGQ in the peptidyl transferase center during translation terminationELECTRON MICROSCOPY3.242018-02-21
1167JT1|1|316S ribosomal RNAEscherichia coli K-1270S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)ELECTRON MICROSCOPY3.32020-11-11
1176WDG|1|316S ribosomal RNA, mRNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)ELECTRON MICROSCOPY3.32020-07-01
1186WD1|1|316S ribosomal RNA, mRNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)ELECTRON MICROSCOPY3.32020-07-01
1196WDF|1|316S ribosomal RNA, mRNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)ELECTRON MICROSCOPY3.32020-07-01
1206OFX|1|316S ribosomal RNA, mRNAEscherichia coliNon-rotated ribosome (Structure I)ELECTRON MICROSCOPY3.32019-09-25
1216VWL|1|116S ribosomal RNAEscherichia coli70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)ELECTRON MICROSCOPY3.12020-06-03
1226OG7|1|316S ribosomal RNA, mRNAEscherichia coli70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)ELECTRON MICROSCOPY3.32019-09-25
1235O2R|1|a16S ribosomal RNAEscherichia coliCryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeELECTRON MICROSCOPY3.42017-07-26
1246OGI|1|316S ribosomal RNAEscherichia coli70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)ELECTRON MICROSCOPY3.42019-09-25
1255WFK|1|a16S rRNAEscherichia coli70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.42018-05-02
1265LZD|1|a16S ribosomal RNAEscherichia coliStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)ELECTRON MICROSCOPY3.42016-11-23
1275WE6|1|a16S rRNAEscherichia coli70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.42018-04-25
1287JT2|1|316S ribosomal RNAEscherichia coli K-1270S ribosome stalled on long mRNA with ArfB bound in the A siteELECTRON MICROSCOPY3.52020-11-11
1296WNV|1|316S ribosomal RNAEscherichia coli70S ribosome without free 5S rRNA and with a perturbed PTCELECTRON MICROSCOPY3.52020-06-24
1306BU8|1|A16S ribosomal RNA, mRNAEscherichia coli70S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.52018-01-31
1315LZE|1|a+ 5LZE|1|y+ 5LZE|1|v+ 5LZE|1|x16S ribosomal RNA, fMetSec-tRNASec, tRNAfMet, SECIS mRNAEscherichia coliStructure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)ELECTRON MICROSCOPY3.52016-11-23
1325MDY|1|216S ribosomal RNAEscherichia coliStructure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.352016-12-21
1336X7F|1|D16S rRNAEscherichia coliCryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.52020-09-02
1345U4I|1|a16S rRNAEscherichia coliStructural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeELECTRON MICROSCOPY3.52017-01-11
1356ZTM|1|AA16S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in collided state without NusGELECTRON MICROSCOPY3.32020-09-16
1366ZTJ|1|AA16S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)ELECTRON MICROSCOPY3.42020-09-16
1375IQR|1|2SSU rRNAEscherichia coliStructure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY32016-05-04
1383JBV|1|ARNA (1530-MER)Escherichia coliMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.322016-01-27
1396OSQ|1|216S ribosomal RNAEscherichia coliRF1 accommodated state bound Release complex 70S at long incubation time pointELECTRON MICROSCOPY3.52019-06-26
1406VWM|1|116S ribosomal RNAEscherichia coli70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)ELECTRON MICROSCOPY3.42020-06-03
1416VWN|1|116S ribosomal RNAEscherichia coli70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)ELECTRON MICROSCOPY3.42020-06-03
1426ORL|1|216S ribosomal RNAEscherichia coliRF1 pre-accommodated 70S complex at 24 msELECTRON MICROSCOPY3.52019-06-19
1436W7N|1|A16S rRNAEscherichia coli30S-Inactive-low-Mg2+ Class AELECTRON MICROSCOPY3.42020-10-21
1446ZTL|1|AA16S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in collided state bound to NusGELECTRON MICROSCOPY3.52020-09-16

Release history

Release3.1653.1663.1673.1683.1693.1703.1713.172
Date2021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-31

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16W7N|1|A30S-Inactive-low-Mg2+ Class AELECTRON MICROSCOPY3.41372
26OGI|1|370S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)ELECTRON MICROSCOPY3.41539
36VWL|1|170S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)ELECTRON MICROSCOPY3.11521
43JBV|1|AMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.321530
54V9O|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
64V9O|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
74V9D|1|AAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31538
84V9C|1|CAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.31538
94WOI|1|AA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31538
103JCE|1|aStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.21533
116VWM|1|170S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)ELECTRON MICROSCOPY3.41508
126VWN|1|170S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)ELECTRON MICROSCOPY3.41508
136OFX|1|3Non-rotated ribosome (Structure I)ELECTRON MICROSCOPY3.31539
146OG7|1|370S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)ELECTRON MICROSCOPY3.31539
157JT2|1|370S ribosome stalled on long mRNA with ArfB bound in the A siteELECTRON MICROSCOPY3.51539
167JT1|1|370S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)ELECTRON MICROSCOPY3.31539
176WNW|1|3Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNAELECTRON MICROSCOPY3.21539
186BU8|1|A70S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.51539
195UYM|1|A70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.21539
206WDE|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY31539
216WDD|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-A)ELECTRON MICROSCOPY3.21539
225AFI|1|a2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.91528
235LZE|1|a+5LZE|1|y+5LZE|1|v+5LZE|1|xStructure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)ELECTRON MICROSCOPY3.51528
245LZD|1|aStructure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)ELECTRON MICROSCOPY3.41528
256ZTL|1|AAE. coli 70S-RNAP expressome complex in collided state bound to NusGELECTRON MICROSCOPY3.51522
266ZTM|1|AAE. coli 70S-RNAP expressome complex in collided state without NusGELECTRON MICROSCOPY3.31522
276ZTJ|1|AAE. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)ELECTRON MICROSCOPY3.41522
286ZTP|1|AAE. coli 70S-RNAP expressome complex in uncoupled state 6ELECTRON MICROSCOPY31522
296ZU1|1|AAE. coli 70S-RNAP expressome complex in uncoupled state 2ELECTRON MICROSCOPY31522
306ZTO|1|AAE. coli 70S-RNAP expressome complex in uncoupled state 1ELECTRON MICROSCOPY31522
317K00|1|AStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.981508
326XZA|1|A1E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.661523
336XZB|1|A1E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.541523
345WE6|1|a70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.41528
355WE4|1|a70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.11529
365WDT|1|a70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY31529
375WFS|1|a70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY31529
385O2R|1|aCryo-EM structure of the proline-rich antimicrobial peptide Api137 bound to the terminating ribosomeELECTRON MICROSCOPY3.41539
394WOI|1|DA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION31539
404V9C|1|AAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.31539
414V9D|1|BAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION31539
425IQR|1|2Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY31522
435U4I|1|aStructural Basis of Co-translational Quality Control by ArfA and RF2 Bound to RibosomeELECTRON MICROSCOPY3.51523
446YSS|1|aStructure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateELECTRON MICROSCOPY2.61529
456YSR|1|aStructure of the P+9 stalled ribosome complexELECTRON MICROSCOPY3.11528
466OSQ|1|2RF1 accommodated state bound Release complex 70S at long incubation time pointELECTRON MICROSCOPY3.51523
476ORE|1|2Release complex 70SELECTRON MICROSCOPY2.91523
486X7F|1|DCryo-EM structure of an Escherichia coli coupled transcription-translation complex B2 (TTC-B2) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.51524
496X7K|1|DCryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.11524
506X6T|1|DCryo-EM structure of an Escherichia coli coupled transcription-translation complex B1 (TTC-B1) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-siteELECTRON MICROSCOPY3.21524
515MDZ|1|2Structure of the 70S ribosome (empty A site)ELECTRON MICROSCOPY3.11523
525MDW|1|2Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.061523
535MDY|1|2Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)ELECTRON MICROSCOPY3.351523
545MDV|1|2Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.971523
556C4I|1|aConformation of methylated GGQ in the peptidyl transferase center during translation terminationELECTRON MICROSCOPY3.241523
566OM6|1|2Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNAELECTRON MICROSCOPY3.11523
575NWY|1|02.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.91539
586WD0|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY31539
596H4N|1|aStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY31534
606Y69|1|aCryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.861539
615MGP|1|aStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.11539
626SZS|1|aRelease factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisELECTRON MICROSCOPY3.061540
636ENU|1|aPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.11539
646ENF|1|aCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.21539
655WFK|1|a70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.41531
665U9G|1|A3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)ELECTRON MICROSCOPY3.21539
675U9F|1|A3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)ELECTRON MICROSCOPY3.21539
686TBV|1|16S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.71523
696TC3|1|16S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.71523
705H5U|1|hMechanistic insights into the alternative translation termination by ArfA and RF2ELECTRON MICROSCOPY3.011534
716ORL|1|2RF1 pre-accommodated 70S complex at 24 msELECTRON MICROSCOPY3.51523
726WDF|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)ELECTRON MICROSCOPY3.31539
736WDG|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)ELECTRON MICROSCOPY3.31539
746WD1|1|3Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)ELECTRON MICROSCOPY3.31539
756WNV|1|370S ribosome without free 5S rRNA and with a perturbed PTCELECTRON MICROSCOPY3.51539
764V50|1|AACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.221530
774V50|1|CACrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.221530
784V57|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.51530
794V52|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.211530
804V64|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.51530
814V54|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.31530
824V4H|1|AACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.461530
834V4Q|1|AACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.461530
844WWW|1|XACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.11530
854V7S|1|CACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.251530
864V7V|1|CACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.291530
874V7T|1|CACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.191530
884V6C|1|CACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.191530
894V7U|1|CACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.11530
906I7V|1|BARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.91533
914WF1|1|CACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.091539
924U1V|1|CACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31539
934U1U|1|CACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951539
944U20|1|CACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91539
954U27|1|CACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81539
964U25|1|CACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91539
974U26|1|CACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81539
984U24|1|CACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91539
994YBB|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11522
1005IT8|1|BAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.121522
1015J5B|1|BAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81522
1025J91|1|BAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961522
1035J8A|1|BAStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.11522
1045J7L|1|BAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31522
1055JC9|1|BAStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.031522
1065J88|1|BAStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.321522
1075J88|1|AAStructure of the E coli 70S ribosome with the U1060A mutation in 16S rRNAX-RAY DIFFRACTION3.321523
1085JC9|1|AAStructure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNAX-RAY DIFFRACTION3.031523
1095IT8|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION3.121523
1105J7L|1|AAStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION31523
1115J8A|1|AAStructure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecyclineX-RAY DIFFRACTION3.11523
1125J91|1|AAStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.961523
1135J5B|1|AAStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.81523
1144YBB|1|AAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.11523
1156I7V|1|AARibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.91522
1164U24|1|AACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.91538
1174U26|1|AACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.81538
1184U25|1|AACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.91538
1194U27|1|AACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.81538
1204U1V|1|AACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION31538
1214U20|1|AACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.91538
1224U1U|1|AACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.951538
1234WF1|1|AACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.091538
1244WWW|1|QACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.11533
1254V7S|1|AACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.251533
1264V6C|1|AACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.191533
1274V7T|1|AACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.191533
1284V7V|1|AACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.291533
1294V7U|1|AACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.11533
1304V9P|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1314V9O|1|DAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1324V9P|1|BAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1334V9O|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1344V9P|1|HAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1354V9P|1|FAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.91533
1364V57|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.51530
1374V52|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.211530
1384V64|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.51530
1394V54|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.31530
1404V4Q|1|CACrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.461530
1414V4H|1|CACrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.461530
1424V85|1|AACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.21532
1436LKQ|1|sThe Structural Basis for Inhibition of Ribosomal Translocation by ViomycinX-RAY DIFFRACTION3.11532
1446YST|1|aStructure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis stateELECTRON MICROSCOPY3.21529