BGSU RNA Site //

Equivalence class NR_3.5_60848.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
17EZ2|1|N (rep)Group I catalytic intronHolo L-16 ScaI Tetrahymena ribozyme S1, Holo L-16 ScaI Tetrahymena ribozyme S2, Holo L-16 ScaI Tetrahymena ribozymeTetrahymena thermophilaEukaryaRF00028Holo L-16 ScaI Tetrahymena ribozymeElectron microscopy3.052021-08-25
27XSN|1|NGroup I catalytic intronRNA (387-MER)Tetrahymena thermophilaEukaryaRF00028Native Tetrahymena ribozyme conformationElectron microscopy3.012022-08-03
37EZ0|1|NGroup I catalytic intronApo L-21 ScaI Tetrahymena ribozymeTetrahymena thermophilaEukaryaRF00028Apo L-21 ScaI Tetrahymena ribozymeElectron microscopy3.142021-08-25
47R6L|1|AGroup I catalytic intron fragmentGroup I intron, 5 prime fragment, Group I intron, 3 prime fragment plus 3 prime exonTetrahymena thermophilaEukaryaRF000285 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructElectron microscopy2.852022-05-04

Release history

Release3.2423.2433.2443.245
Date2022-08-032022-08-102022-08-172022-08-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_60848.1NR_3.5_60074.13.242(3) 7R6L|1|A, 7EZ2|1|N, 7EZ0|1|N(1) 7XSN|1|N(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.5_60848.1NR_3.5_60848.23.246(4) 7EZ0|1|N, 7EZ2|1|N, 7R6L|1|A, 7XSN|1|N(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17EZ2|1|NHolo L-16 ScaI Tetrahymena ribozymeELECTRON MICROSCOPY3.05392
27EZ0|1|NApo L-21 ScaI Tetrahymena ribozymeELECTRON MICROSCOPY3.14387
37XSN|1|NNative Tetrahymena ribozyme conformationELECTRON MICROSCOPY3.01387
47R6L|1|A5 prime exon-free pre-2S intermediate of the Tetrahymena group I intron, symmetry-expanded monomer from a synthetic dimeric constructELECTRON MICROSCOPY2.85343