Equivalence class NR_3.5_73428.17 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7QI4|1|B (rep) | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Human mitochondrial ribosome at 2.2 A resolution | Electron microscopy | 2.21 | 2022-07-13 | ||
| 2 | 6ZM6|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | Electron microscopy | 2.59 | 2021-01-13 | ||
| 3 | 7PO4|1|B | tRNAVal | Homo sapiens | Mitochondria | Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP) | Electron microscopy | 2.56 | 2022-06-15 | ||
| 4 | 6ZM5|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | Electron microscopy | 2.89 | 2021-01-13 | ||
| 5 | 7ODR|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | State A of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 2.9 | 2021-06-23 | ||
| 6 | 7OF0|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | Electron microscopy | 2.2 | 2021-06-09 | ||
| 7 | 7ODT|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | State C of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 2021-06-23 | ||
| 8 | 7ODS|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | State B of the human mitoribosomal large subunit assembly intermediate | Electron microscopy | 3.1 | 2021-06-23 | ||
| 9 | 7O9M|1|B | MT-TRNAVAL | Homo sapiens | Mitochondria | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | Electron microscopy | 2.5 | 2021-06-30 | ||
| 10 | 7OF7|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | Electron microscopy | 2.5 | 2021-06-23 | ||
| 11 | 7OF6|1|B | Mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | Electron microscopy | 2.6 | 2021-06-09 | ||
| 12 | 7OF4|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | Electron microscopy | 2.7 | 2021-06-09 | ||
| 13 | 7OF3|1|B | Mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | Electron microscopy | 2.7 | 2021-05-19 | ||
| 14 | 7OF2|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | Electron microscopy | 2.7 | 2021-06-02 | ||
| 15 | 7O9K|1|B | MT-TRNAVAL | Homo sapiens | Mitochondria | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | Electron microscopy | 3.1 | 2021-06-30 | ||
| 16 | 7OF5|1|B | Mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | Electron microscopy | 2.9 | 2021-06-09 | ||
| 17 | 6VMI|1|B | tRNAval | Homo sapiens | Mitochondria | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | Electron microscopy | 2.96 | 2020-08-05 | ||
| 18 | 6VLZ|1|B | tRNAval | Homo sapiens | Mitochondria | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | Electron microscopy | 2.97 | 2020-08-05 | ||
| 19 | 7QH6|1|B | mitochondrial tRNAVal | Homo sapiens | Eukarya | Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1 | Electron microscopy | 3.08 | 2022-03-02 | ||
| 20 | 7A5J|1|B | mt-tRNAVal | Homo sapiens | Mitochondria | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | Electron microscopy | 3.1 | 2020-12-23 | ||
| 21 | 7OIC|1|B | mitochondrial Val tRNA | Homo sapiens | Mitochondria | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4 | Electron microscopy | 3.1 | 2021-09-15 | ||
| 22 | 5OOL|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.06 | 2017-09-13 | ||
| 23 | 5OOM|1|B | mitochondrial tRNAVal | Homo sapiens | Mitochondria | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | Electron microscopy | 3.03 | 2017-09-13 | ||
| 24 | 7L20|1|B | tRNAval | Homo sapiens | Mitochondria | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | Electron microscopy | 3.15 | 2021-05-12 | ||
| 25 | 7OIA|1|B | mitochondrial Val tRNA | Homo sapiens | Mitochondria | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C | Electron microscopy | 3.2 | 2021-09-15 | ||
| 26 | 7OIB|1|B | mitochondrial Val tRNA | Homo sapiens | Mitochondria | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D | Electron microscopy | 3.3 | 2021-09-15 | ||
| 27 | 7OI9|1|B | mitochondrial Val tRNA | Homo sapiens | Mitochondria | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B | Electron microscopy | 3.3 | 2021-09-15 | ||
| 28 | 7A5H|1|B | mt-tRNAVal | Homo sapiens | Mitochondria | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | Electron microscopy | 3.3 | 2020-12-23 | ||
| 29 | 6ZSC|1|XB | mt-tRNAVal | Homo sapiens | Mitochondria | Human mitochondrial ribosome in complex with E-site tRNA | Electron microscopy | 3.5 | 2020-09-16 | ||
| 30 | 7L08|1|B | tRNAVAL | Homo sapiens | Mitochondria | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | Electron microscopy | 3.49 | 2021-05-12 | ||
| 31 | 7OI7|1|B | mitochondrial Val tRNA | Homo sapiens | Mitochondria | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2 | Electron microscopy | 3.5 | 2021-09-15 | ||
| 32 | 7OIE|1|B | mitochondrial Val tRNA | Homo sapiens | Mitochondria | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B | Electron microscopy | 3.5 | 2021-09-15 | ||
| 33 | 7OI8|1|B | mitochondrial Val tRNA | Homo sapiens | Mitochondria | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A | Electron microscopy | 3.5 | 2021-09-15 | ||
| 34 | 3J7Y|1|B | mt-tRNAVal | Homo sapiens | Mitochondria | Structure of the large ribosomal subunit from human mitochondria | Electron microscopy | 3.4 | 2014-10-15 | ||
| 35 | 3J9M|1|B | mt-tRNAVal | Homo sapiens | Mitochondria | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
Release history
| Release | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_73428.17 | NR_3.5_73428.16 | 3.239 | (34) 7OI8|1|B, 7OI7|1|B, 7OF7|1|B, 7OF6|1|B, 7OF5|1|B, 7OF4|1|B, 7OF3|1|B, 7OF2|1|B, 7OF0|1|B, 7ODT|1|B, 7ODS|1|B, 7ODR|1|B, 7O9M|1|B, 7O9K|1|B, 7L20|1|B, 7L08|1|B, 7A5J|1|B, 7A5H|1|B, 6ZSC|1|XB, 6ZM6|1|B, 6ZM5|1|B, 6VMI|1|B, 6VLZ|1|B, 5OOM|1|B, 5OOL|1|B, 7QH6|1|B, 3J9M|1|B, 7PO4|1|B, 3J7Y|1|B, 7OIE|1|B, 7OIC|1|B, 7OIB|1|B, 7OIA|1|B, 7OI9|1|B | (1) 7QI4|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_73428.17 | NR_3.5_73428.18 | 3.283 | (35) 6ZSC|1|XB, 7OF7|1|B, 6ZM6|1|B, 7OF6|1|B, 6ZM5|1|B, 7OF5|1|B, 6VMI|1|B, 7OF4|1|B, 6VLZ|1|B, 7OF3|1|B, 5OOM|1|B, 7OF2|1|B, 5OOL|1|B, 7OF0|1|B, 7QI4|1|B, 3J9M|1|B, 7ODT|1|B, 7QH6|1|B, 3J7Y|1|B, 7ODS|1|B, 7PO4|1|B, 7ODR|1|B, 7OIE|1|B, 7O9M|1|B, 7OIC|1|B, 7O9K|1|B, 7OIB|1|B, 7L20|1|B, 7OIA|1|B, 7L08|1|B, 7OI9|1|B, 7A5J|1|B, 7OI8|1|B, 7A5H|1|B, 7OI7|1|B | (0) | (1) 7QI6|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QH6|1|B | Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1 | ELECTRON MICROSCOPY | 3.08 | 56 |
| 2 | 7OIC|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 4 | ELECTRON MICROSCOPY | 3.1 | 56 |
| 3 | 3J7Y|1|B | Structure of the large ribosomal subunit from human mitochondria | ELECTRON MICROSCOPY | 3.4 | 57 |
| 4 | 3J9M|1|B | Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 56 |
| 5 | 7A5H|1|B | Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1 | ELECTRON MICROSCOPY | 3.3 | 56 |
| 6 | 7A5J|1|B | Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs | ELECTRON MICROSCOPY | 3.1 | 56 |
| 7 | 7OI8|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3A | ELECTRON MICROSCOPY | 3.5 | 56 |
| 8 | 7OIE|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B | ELECTRON MICROSCOPY | 3.5 | 56 |
| 9 | 7OIB|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3D | ELECTRON MICROSCOPY | 3.3 | 56 |
| 10 | 7OI9|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3B | ELECTRON MICROSCOPY | 3.3 | 56 |
| 11 | 7OI7|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 2 | ELECTRON MICROSCOPY | 3.5 | 56 |
| 12 | 7OIA|1|B | Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 3C | ELECTRON MICROSCOPY | 3.2 | 56 |
| 13 | 5OOM|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.03 | 56 |
| 14 | 5OOL|1|B | Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA | ELECTRON MICROSCOPY | 3.06 | 56 |
| 15 | 7OF7|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1). | ELECTRON MICROSCOPY | 2.5 | 56 |
| 16 | 7OF0|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1). | ELECTRON MICROSCOPY | 2.2 | 56 |
| 17 | 7OF3|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2). | ELECTRON MICROSCOPY | 2.7 | 56 |
| 18 | 7OF5|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2). | ELECTRON MICROSCOPY | 2.9 | 56 |
| 19 | 7OF2|1|B | Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6. | ELECTRON MICROSCOPY | 2.7 | 56 |
| 20 | 7OF6|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2). | ELECTRON MICROSCOPY | 2.6 | 56 |
| 21 | 7OF4|1|B | Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1). | ELECTRON MICROSCOPY | 2.7 | 56 |
| 22 | 7O9M|1|B | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module | ELECTRON MICROSCOPY | 2.5 | 60 |
| 23 | 7L08|1|B | Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | ELECTRON MICROSCOPY | 3.49 | 56 |
| 24 | 7L20|1|B | Cryo-EM structure of the human 39S mitoribosomal subunit in complex with RRFmt and EF-G2mt. | ELECTRON MICROSCOPY | 3.15 | 56 |
| 25 | 6VLZ|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) | ELECTRON MICROSCOPY | 2.97 | 56 |
| 26 | 6VMI|1|B | Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) | ELECTRON MICROSCOPY | 2.96 | 56 |
| 27 | 6ZSC|1|XB | Human mitochondrial ribosome in complex with E-site tRNA | ELECTRON MICROSCOPY | 3.5 | 59 |
| 28 | 7QI4|1|B | Human mitochondrial ribosome at 2.2 A resolution | ELECTRON MICROSCOPY | 2.21 | 69 |
| 29 | 7ODR|1|B | State A of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 2.9 | 72 |
| 30 | 7ODS|1|B | State B of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 |
| 31 | 6ZM5|1|B | Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide | ELECTRON MICROSCOPY | 2.89 | 72 |
| 32 | 6ZM6|1|B | Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNA | ELECTRON MICROSCOPY | 2.59 | 72 |
| 33 | 7ODT|1|B | State C of the human mitoribosomal large subunit assembly intermediate | ELECTRON MICROSCOPY | 3.1 | 72 |
| 34 | 7PO4|1|B | Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP) | ELECTRON MICROSCOPY | 2.56 | 69 |
| 35 | 7O9K|1|B | Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu | ELECTRON MICROSCOPY | 3.1 | 60 |