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Equivalence class NR_3.5_74023.10 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16S0X|1|a (rep)Small subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF00177Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.Electron microscopy2.422019-08-21
25NGM|1|AaSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureusBacteriaRF001772.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
37P48|1|aSmall subunit ribosomal RNA16S rRNAStaphylococcus aureusBacteriaRF00177Staphylococcus aureus ribosome in complex with Sal(B)Electron microscopy2.92022-02-02
47ASP|1|XSmall subunit ribosomal RNA16S rRNAStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 50 minutes incubation at 37CElectron microscopy2.862021-11-17
57NHL|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
67NHM|1|aSmall subunit ribosomal RNA16S rRNA, RNA (5'-R(P*GP*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3')Staphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S ribosome from Staphylococcus aureusElectron microscopy3.12021-05-05
76YEF|1|aSmall subunit ribosomal RNA16S rRNA, mRNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF0017770S initiation complex with assigned rRNA modifications from Staphylococcus aureusElectron microscopy3.22021-01-27
87ASO|1|XSmall subunit ribosomal RNA16SStaphylococcus aureusBacteriaRF00177Staphylococcus aureus 70S after 30 minutes incubation at 37CElectron microscopy3.112021-11-17
97BGD|1|aSmall subunit ribosomal RNA16S ribosomal RNAStaphylococcus aureus subsp. aureus NCTC 8325BacteriaRF00177Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)Electron microscopy3.22021-12-08

Release history

Release3.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.311
Date2023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_74023.10NR_3.5_74023.93.301(9) 5NGM|1|Aa, 6S0X|1|a, 6YEF|1|a, 7ASO|1|X, 7ASP|1|X, 7BGD|1|a, 7NHL|1|a, 7NHM|1|a, 7P48|1|a(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16S0X|1|aErythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.ELECTRON MICROSCOPY2.421539
25NGM|1|Aa2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.91539
37BGD|1|aStaphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)ELECTRON MICROSCOPY3.21096
47NHM|1|a70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11531
57NHL|1|aVgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.11538
67P48|1|aStaphylococcus aureus ribosome in complex with Sal(B)ELECTRON MICROSCOPY2.91479
76YEF|1|a70S initiation complex with assigned rRNA modifications from Staphylococcus aureusELECTRON MICROSCOPY3.21540
87ASO|1|XStaphylococcus aureus 70S after 30 minutes incubation at 37CELECTRON MICROSCOPY3.111415
97ASP|1|XStaphylococcus aureus 70S after 50 minutes incubation at 37CELECTRON MICROSCOPY2.861447
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