Equivalence class NR_3.5_78372.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5K77|1|x (rep) | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Eukarya | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | ||
| 2 | 5K77|1|z | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Eukarya | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | ||
| 3 | 5K77|1|v | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Eukarya | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | ||
| 4 | 5K77|1|y | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Eukarya | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | ||
| 5 | 5K77|1|w | brnch 2 of branched RNA 5'-UAA(-2'GU)CA-3' | Saccharomyces cerevisiae | Eukarya | Dbr1 in complex with 7-mer branched RNA | X-ray diffraction | 2.17 | 2016-12-07 | ||
| 6 | 5F6C|1|C | RNA (5'-R(P*GP*U)-3') | Escherichia coli | Bacteria | The structure of E. coli RNase E catalytically inactive mutant with RNA bound | X-ray diffraction | 3 | 2016-12-14 | ||
| 7 | 6I0T|1|B | RNA (5'-R(*GP*U)-3') | Drosophila melanogaster | Eukarya | Crystal structure of DmTailor in complex with GpU | X-ray diffraction | 2 | 2018-12-05 | ||
| 8 | 1B2M|1|C | 5'-R(*GP*(U34))-3' | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-ray diffraction | 2 | 1999-03-25 | ||||
| 9 | 1B2M|1|D | 5'-R(*GP*(U34))-3' | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-ray diffraction | 2 | 1999-03-25 | ||||
| 10 | 1B2M|1|E | 5'-R(*GP*(U34))-3' | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-ray diffraction | 2 | 1999-03-25 |
Release history
| Release | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5K77|1|y | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 2 | 5F6C|1|C | The structure of E. coli RNase E catalytically inactive mutant with RNA bound | X-RAY DIFFRACTION | 3 | 2 |
| 3 | 6I0T|1|B | Crystal structure of DmTailor in complex with GpU | X-RAY DIFFRACTION | 2 | 2 |
| 4 | 5K77|1|x | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 5 | 1B2M|1|D | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-RAY DIFFRACTION | 2 | 1 |
| 6 | 1B2M|1|E | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-RAY DIFFRACTION | 2 | 1 |
| 7 | 1B2M|1|C | THREE-DIMENSIONAL STRUCTURE OF RIBONULCEASE T1 COMPLEXED WITH AN ISOSTERIC PHOSPHONATE ANALOGUE OF GPU: ALTERNATE SUBSTRATE BINDING MODES AND CATALYSIS. | X-RAY DIFFRACTION | 2 | 1 |
| 8 | 5K77|1|w | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 9 | 5K77|1|z | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |
| 10 | 5K77|1|v | Dbr1 in complex with 7-mer branched RNA | X-RAY DIFFRACTION | 2.17 | 2 |