Equivalence class NR_3.5_80276.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6E1S|1|A (rep) | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-ray diffraction | 1.8 | 2019-04-10 | |||
| 2 | 6E1T|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-ray diffraction | 1.8 | 2019-04-10 | |||
| 3 | 6E1W|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1 | X-ray diffraction | 1.69 | 2019-04-10 | |||
| 4 | 6E1U|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine | X-ray diffraction | 1.94 | 2019-04-10 | |||
| 5 | 7E9E|1|A | 33-mer RNA | Caldanaerobacter subterraneus subsp. tengcongensis | Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe | X-ray diffraction | 1.57 | 2021-11-17 | |||
| 6 | 6VUH|1|A | PREQ1 RIBOSWITCH | Caldanaerobacter subterraneus | APO PreQ1 riboswitch aptamer grown in Mn2+ | X-ray diffraction | 2 | 2020-06-24 | |||
| 7 | 6VUI|1|A | PREQ1 RIBOSWITCH | Caldanaerobacter subterraneus | Metabolite-bound PreQ1 riboswitch with Mn2+ | X-ray diffraction | 2.68 | 2020-06-24 | |||
| 8 | 7E9I|1|A | 33-mer RNA | Caldanaerobacter subterraneus subsp. tengcongensis | Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe | X-ray diffraction | 2.8 | 2021-11-17 | |||
| 9 | 6E1V|1|A | RNA (33-MER) | Caldanaerobacter subterraneus | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine | X-ray diffraction | 2.56 | 2019-04-10 | |||
| 10 | 3Q50|1|A | PREQ1 RIBOSWITCH | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state | X-ray diffraction | 2.75 | 2011-05-18 | ||||
| 11 | 3Q51|1|A | PREQ1 RIBOSWITCH | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state. | X-ray diffraction | 2.85 | 2011-05-18 | ||||
| 12 | 3GCA|1|A | PreQ1 riboswitch | The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain | X-ray diffraction | 2.75 | 2009-03-03 |
Release history
| Release | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 | 3.302 | 3.303 | 3.304 | 3.305 | 3.306 | 3.307 | 3.308 | 3.309 | 3.310 | 3.311 | 3.312 | 3.313 | 3.314 | 3.315 | 3.316 | 3.317 | 3.318 | 3.319 | 3.320 | 3.321 | 3.322 | 3.323 | 3.324 | 3.325 | 3.326 | 3.327 | 3.328 | 3.329 | 3.330 | 3.331 | 3.332 | 3.333 | 3.334 | 3.335 | 3.336 | 3.337 | 3.338 | 3.339 | 3.340 | 3.341 | 3.342 | 3.343 | 3.344 | 3.345 | 3.346 | 3.347 | 3.348 | 3.349 | 3.350 | 3.351 |
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| Date | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 | 2023-09-27 | 2023-10-04 | 2023-10-11 | 2023-10-18 | 2023-10-25 | 2023-11-01 | 2023-11-08 | 2023-11-15 | 2023-11-24 | 2023-11-29 | 2023-12-06 | 2023-12-13 | 2023-12-20 | 2023-12-27 | 2024-01-03 | 2024-01-10 | 2024-01-17 | 2024-01-24 | 2024-01-31 | 2024-02-07 | 2024-02-14 | 2024-02-21 | 2024-02-28 | 2024-03-06 | 2024-03-13 | 2024-03-20 | 2024-03-27 | 2024-04-03 | 2024-04-10 | 2024-04-17 | 2024-04-24 | 2024-05-01 | 2024-05-08 | 2024-05-15 | 2024-05-22 | 2024-05-29 | 2024-06-05 | 2024-06-12 | 2024-06-19 | 2024-06-26 | 2024-07-03 | 2024-07-10 | 2024-07-17 | 2024-07-25 | 2024-07-31 | 2024-08-07 | 2024-08-14 | 2024-08-21 | 2024-08-28 | 2024-09-04 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6VUI|1|A | Metabolite-bound PreQ1 riboswitch with Mn2+ | X-RAY DIFFRACTION | 2.68 | 33 |
| 2 | 6E1U|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 2: 2-[(dibenzo[b,d]furan-2-yl)oxy]-N,N-dimethylethan-1-amine | X-RAY DIFFRACTION | 1.94 | 31 |
| 3 | 6E1S|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-RAY DIFFRACTION | 1.8 | 31 |
| 4 | 6E1T|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 1: 2-[(dibenzo[b,d]furan-2-yl)oxy]ethan-1-amine | X-RAY DIFFRACTION | 1.8 | 30 |
| 5 | 6VUH|1|A | APO PreQ1 riboswitch aptamer grown in Mn2+ | X-RAY DIFFRACTION | 2 | 33 |
| 6 | 3Q51|1|A | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-free state. | X-RAY DIFFRACTION | 2.85 | 32 |
| 7 | 6E1V|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound 3: 2-[(9H-carbazol-3-yl)oxy]-N,N-dimethylethan-1-amine | X-RAY DIFFRACTION | 2.56 | 30 |
| 8 | 3GCA|1|A | The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain | X-RAY DIFFRACTION | 2.75 | 33 |
| 9 | 3Q50|1|A | Structural analysis of a class I PreQ1 riboswitch aptamer in the metabolite-bound state | X-RAY DIFFRACTION | 2.75 | 33 |
| 10 | 7E9I|1|A | Crystal structure of a class I PreQ1 riboswitch aptamer (wild-type) complexed with a cognate ligand-derived photoaffinity probe | X-RAY DIFFRACTION | 2.8 | 33 |
| 11 | 7E9E|1|A | Crystal structure of a class I PreQ1 riboswitch aptamer (ab13-14) complexed with a cognate ligand-derived photoaffinity probe | X-RAY DIFFRACTION | 1.57 | 31 |
| 12 | 6E1W|1|A | Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1 | X-RAY DIFFRACTION | 1.69 | 31 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: