Equivalence class NR_3.5_88157.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4CS1|1|A (rep) | 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3' | Haloarcula marismortui | Archaea | Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound. | X-ray diffraction | 2 | 2014-11-19 | ||
| 2 | 6Q8U|1|A+ 6Q8U|1|B | RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3') | Haloarcula marismortui | Archaea | Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein | X-ray diffraction | 1.99 | 2019-07-03 | ||
| 3 | 7EFG|1|A | RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif | X-ray diffraction | 2.6 | 2022-04-13 | ||
| 4 | 4C40|1|A | 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3' | Haloarcula marismortui | Archaea | The molecular recognition of kink turn structure by the L7Ae class of proteins | X-ray diffraction | 2.2 | 2013-11-06 | ||
| 5 | 5FJ0|1|C | HMKT-7 | Haloarcula marismortui | Archaea | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-ray diffraction | 2.2 | 2016-09-28 | ||
| 6 | 5FJ0|1|A+ 5FJ0|1|B | HMKT-7 | Haloarcula marismortui | Archaea | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-ray diffraction | 2.2 | 2016-09-28 | ||
| 7 | 7F8Z|1|I+ 7F8Z|1|J | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3 | 2022-07-06 | ||
| 8 | 7F8Z|1|G+ 7F8Z|1|H | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3 | 2022-07-06 | ||
| 9 | 7F8Z|1|A+ 7F8Z|1|B | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3 | 2022-07-06 | ||
| 10 | 7F8Z|1|E+ 7F8Z|1|F | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3 | 2022-07-06 | ||
| 11 | 7F8Z|1|C+ 7F8Z|1|D | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3 | 2022-07-06 | ||
| 12 | 7EI9|1|A+ 7EI9|1|B | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 2.7 | 2022-03-30 | ||
| 13 | 7EFI|1|A | DNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3') | synthetic construct | Synthetic | RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA | X-ray diffraction | 2.9 | 2022-03-30 | ||
| 14 | 7EFH|1|A | RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif | X-ray diffraction | 2.7 | 2022-03-23 | ||
| 15 | 7EIA|1|G+ 7EIA|1|H | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 2022-03-30 | ||
| 16 | 7EIA|1|A+ 7EIA|1|B | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 2022-03-30 | ||
| 17 | 7EI8|1|C+ 7EI8|1|D | RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3.1 | 2022-03-30 | ||
| 18 | 7EIA|1|C+ 7EIA|1|D | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 2022-03-30 | ||
| 19 | 7EIA|1|E+ 7EIA|1|F | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with pyrrolo cytosine | X-ray diffraction | 3 | 2022-03-30 | ||
| 20 | 7EI8|1|A+ 7EI8|1|B | RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3.1 | 2022-03-30 | ||
| 21 | 7EI7|1|A+ 7EI7|1|B | RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | synthetic construct | Synthetic | RNA kink-turn motif with 2-aminopurine | X-ray diffraction | 3.2 | 2022-03-30 |
Release history
| Release | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 | 3.282 | 3.283 | 3.284 | 3.285 | 3.286 | 3.287 | 3.288 | 3.289 | 3.290 | 3.291 | 3.292 | 3.293 | 3.294 | 3.295 | 3.296 | 3.297 | 3.298 | 3.299 | 3.300 | 3.301 |
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| Date | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 | 2023-05-10 | 2023-05-17 | 2023-05-24 | 2023-05-31 | 2023-06-07 | 2023-06-14 | 2023-06-21 | 2023-06-28 | 2023-07-05 | 2023-07-12 | 2023-07-19 | 2023-07-26 | 2023-08-02 | 2023-08-09 | 2023-08-16 | 2023-08-23 | 2023-08-30 | 2023-09-06 | 2023-09-13 | 2023-09-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.5_88157.3 | NR_3.5_88157.2 | 3.238 | (16) 7EFG|1|A, 7EI9|1|A+7EI9|1|B, 6Q8U|1|A+6Q8U|1|B, 7EI8|1|C+7EI8|1|D, 5FJ0|1|C, 7EI8|1|A+7EI8|1|B, 7EIA|1|G+7EIA|1|H, 5FJ0|1|A+5FJ0|1|B, 7EI7|1|A+7EI7|1|B, 7EIA|1|E+7EIA|1|F, 4CS1|1|A, 7EFI|1|A, 7EIA|1|C+7EIA|1|D, 4C40|1|A, 7EFH|1|A, 7EIA|1|A+7EIA|1|B | (5) 7F8Z|1|C+7F8Z|1|D, 7F8Z|1|G+7F8Z|1|H, 7F8Z|1|A+7F8Z|1|B, 7F8Z|1|E+7F8Z|1|F, 7F8Z|1|I+7F8Z|1|J | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7EFH|1|A | RNA kink-turn motif | X-RAY DIFFRACTION | 2.7 | 19 |
| 2 | 7F8Z|1|C+7F8Z|1|D | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3 | 18 |
| 3 | 7F8Z|1|G+7F8Z|1|H | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3 | 18 |
| 4 | 7F8Z|1|A+7F8Z|1|B | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3 | 18 |
| 5 | 7F8Z|1|E+7F8Z|1|F | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3 | 18 |
| 6 | 7F8Z|1|I+7F8Z|1|J | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3 | 18 |
| 7 | 5FJ0|1|C | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-RAY DIFFRACTION | 2.2 | 19 |
| 8 | 7EI9|1|A+7EI9|1|B | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 2.7 | 18 |
| 9 | 7EI7|1|A+7EI7|1|B | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3.2 | 18 |
| 10 | 7EIA|1|C+7EIA|1|D | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 18 |
| 11 | 5FJ0|1|A+5FJ0|1|B | Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group | X-RAY DIFFRACTION | 2.2 | 19 |
| 12 | 7EIA|1|G+7EIA|1|H | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 18 |
| 13 | 7EIA|1|E+7EIA|1|F | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 18 |
| 14 | 7EIA|1|A+7EIA|1|B | RNA kink-turn motif with pyrrolo cytosine | X-RAY DIFFRACTION | 3 | 18 |
| 15 | 7EI8|1|C+7EI8|1|D | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3.1 | 15 |
| 16 | 7EI8|1|A+7EI8|1|B | RNA kink-turn motif with 2-aminopurine | X-RAY DIFFRACTION | 3.1 | 15 |
| 17 | 6Q8U|1|A+6Q8U|1|B | Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein | X-RAY DIFFRACTION | 1.99 | 20 |
| 18 | 4C40|1|A | The molecular recognition of kink turn structure by the L7Ae class of proteins | X-RAY DIFFRACTION | 2.2 | 19 |
| 19 | 4CS1|1|A | Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound. | X-RAY DIFFRACTION | 2 | 19 |
| 20 | 7EFG|1|A | RNA kink-turn motif | X-RAY DIFFRACTION | 2.6 | 19 |
| 21 | 7EFI|1|A | RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA | X-RAY DIFFRACTION | 2.9 | 12 |