BGSU RNA Site //

Equivalence class NR_3.5_88157.3 Current

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
14CS1|1|A (rep)5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3'Haloarcula marismortuiArchaeaCrystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.X-ray diffraction22014-11-19
26Q8U|1|A+ 6Q8U|1|BRNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3')Haloarcula marismortuiArchaeaStructure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae proteinX-ray diffraction1.992019-07-03
37EFG|1|ARNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motifX-ray diffraction2.62022-04-13
44C40|1|A5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*C)-3'Haloarcula marismortuiArchaeaThe molecular recognition of kink turn structure by the L7Ae class of proteinsX-ray diffraction2.22013-11-06
55FJ0|1|CHMKT-7Haloarcula marismortuiArchaeaStructure of the standard kink turn HmKt-7 as simple duplex in P4222 space groupX-ray diffraction2.22016-09-28
65FJ0|1|A+ 5FJ0|1|BHMKT-7Haloarcula marismortuiArchaeaStructure of the standard kink turn HmKt-7 as simple duplex in P4222 space groupX-ray diffraction2.22016-09-28
77F8Z|1|I+ 7F8Z|1|JRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction32022-07-06
87F8Z|1|G+ 7F8Z|1|HRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction32022-07-06
97F8Z|1|A+ 7F8Z|1|BRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction32022-07-06
107F8Z|1|E+ 7F8Z|1|FRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction32022-07-06
117F8Z|1|C+ 7F8Z|1|DRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction32022-07-06
127EI9|1|A+ 7EI9|1|BRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with pyrrolo cytosineX-ray diffraction2.72022-03-30
137EFI|1|ADNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3')synthetic constructSyntheticRNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction2.92022-03-30
147EFH|1|ARNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motifX-ray diffraction2.72022-03-23
157EIA|1|G+ 7EIA|1|HRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with pyrrolo cytosineX-ray diffraction32022-03-30
167EIA|1|A+ 7EIA|1|BRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with pyrrolo cytosineX-ray diffraction32022-03-30
177EI8|1|C+ 7EI8|1|DRNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction3.12022-03-30
187EIA|1|C+ 7EIA|1|DRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with pyrrolo cytosineX-ray diffraction32022-03-30
197EIA|1|E+ 7EIA|1|FRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with pyrrolo cytosineX-ray diffraction32022-03-30
207EI8|1|A+ 7EI8|1|BRNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction3.12022-03-30
217EI7|1|A+ 7EI7|1|BRNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')synthetic constructSyntheticRNA kink-turn motif with 2-aminopurineX-ray diffraction3.22022-03-30

Release history

Release3.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.280
Date2022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.5_88157.3NR_3.5_88157.23.238(16) 7EIA|1|G+7EIA|1|H, 5FJ0|1|A+5FJ0|1|B, 7EI7|1|A+7EI7|1|B, 7EIA|1|E+7EIA|1|F, 4CS1|1|A, 7EFI|1|A, 7EIA|1|C+7EIA|1|D, 4C40|1|A, 7EFH|1|A, 7EIA|1|A+7EIA|1|B, 7EFG|1|A, 7EI9|1|A+7EI9|1|B, 6Q8U|1|A+6Q8U|1|B, 7EI8|1|C+7EI8|1|D, 5FJ0|1|C, 7EI8|1|A+7EI8|1|B(5) 7F8Z|1|C+7F8Z|1|D, 7F8Z|1|E+7F8Z|1|F, 7F8Z|1|I+7F8Z|1|J, 7F8Z|1|A+7F8Z|1|B, 7F8Z|1|G+7F8Z|1|H(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17EFH|1|ARNA kink-turn motifX-RAY DIFFRACTION2.719
27F8Z|1|C+7F8Z|1|DRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION318
37F8Z|1|G+7F8Z|1|HRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION318
47F8Z|1|A+7F8Z|1|BRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION318
57F8Z|1|E+7F8Z|1|FRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION318
67F8Z|1|I+7F8Z|1|JRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION318
75FJ0|1|CStructure of the standard kink turn HmKt-7 as simple duplex in P4222 space groupX-RAY DIFFRACTION2.219
87EI9|1|A+7EI9|1|BRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION2.718
97EI7|1|A+7EI7|1|BRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION3.218
107EIA|1|C+7EIA|1|DRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION318
115FJ0|1|A+5FJ0|1|BStructure of the standard kink turn HmKt-7 as simple duplex in P4222 space groupX-RAY DIFFRACTION2.219
127EIA|1|G+7EIA|1|HRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION318
137EIA|1|E+7EIA|1|FRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION318
147EIA|1|A+7EIA|1|BRNA kink-turn motif with pyrrolo cytosineX-RAY DIFFRACTION318
157EI8|1|C+7EI8|1|DRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION3.115
167EI8|1|A+7EI8|1|BRNA kink-turn motif with 2-aminopurineX-RAY DIFFRACTION3.115
176Q8U|1|A+6Q8U|1|BStructure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae proteinX-RAY DIFFRACTION1.9920
184C40|1|AThe molecular recognition of kink turn structure by the L7Ae class of proteinsX-RAY DIFFRACTION2.219
194CS1|1|ACrystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.X-RAY DIFFRACTION219
207EFG|1|ARNA kink-turn motifX-RAY DIFFRACTION2.619
217EFI|1|ARNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION2.912
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