Equivalence class NR_3.5_89026.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5L00|1|C+ 5L00|1|D (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 2 | 5L00|1|A+ 5L00|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 3 | 5KRG|1|A+ 5KRG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 | ||
| 4 | 5KRG|1|C+ 5KRG|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_89026.1 | NR_3.5_89026.2 | 2.118 | (4) 5L00|1|C+5L00|1|D, 5L00|1|A+5L00|1|B, 5KRG|1|C+5KRG|1|D, 5KRG|1|A+5KRG|1|B | (0) | (1) 5V0H|1|A+5V0H|1|B |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5L00|1|A+5L00|1|B | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 |
| 2 | 5L00|1|C+5L00|1|D | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 |
| 3 | 5KRG|1|A+5KRG|1|B | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 |
| 4 | 5KRG|1|C+5KRG|1|D | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 |