#IFECompound(s)RNA source organismTitleMethodResolutionDate
15TBW|1|1+ 5TBW|1|4 (rep)25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
25TBW|1|AR+ 5TBW|1|AT25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION32017-07-26
34V88|1|A5+ 4V88|1|A825S rRNA, 5.8S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
44V88|1|A1+ 4V88|1|A425S rRNA, 5.8S rRNASaccharomyces cerevisiaeThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
55I4L|1|5+ 5I4L|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
65I4L|1|1+ 5I4L|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
75MEI|1|AR+ 5MEI|1|AT25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
85MEI|1|1+ 5MEI|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
96HHQ|1|AR+ 6HHQ|1|AT25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
106HHQ|1|1+ 6HHQ|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12019-02-20
115OBM|1|5+ 5OBM|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
125OBM|1|1+ 5OBM|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.42017-12-13
135LYB|1|5+ 5LYB|1|825S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
145NDV|1|1+ 5NDV|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
155ON6|1|1+ 5ON6|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
165LYB|1|1+ 5LYB|1|425S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmnSaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
175ON6|1|AR+ 5ON6|1|AT25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.12018-02-28
185NDV|1|5+ 5NDV|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32017-12-13
195TGM|1|1+ 5TGM|1|425S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
205TGM|1|5+ 5TGM|1|825S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-PheSaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
215DAT|1|5+ 5DAT|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
225DGV|1|5+ 5DGV|1|825S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
235DAT|1|1+ 5DAT|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
245DGV|1|1+ 5DGV|1|425S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')Saccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
255DGE|1|5+ 5DGE|1|825S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
265TGA|1|5+ 5TGA|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
275DGF|1|5+ 5DGF|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
285TGA|1|1+ 5TGA|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
295DGF|1|1+ 5DGF|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
305DGE|1|1+ 5DGE|1|425S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')Saccharomyces cerevisiaeCoping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
315DC3|1|5+ 5DC3|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
325DC3|1|1+ 5DC3|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
336T4Q|1|C1+ 6T4Q|1|C325S rRNA, 5.8S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.62019-12-25
346WOO|1|5+ 6WOO|1|825S ribosomal RNA, 5.8S ribosomal rRNASaccharomyces cerevisiaeCryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.92020-09-23
356TB3|1|BQ+ 6TB3|1|BS25S rRNA, 5.8S rRNASaccharomyces cerevisiaeyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.82020-04-22
366SNT|1|1+ 6SNT|1|3Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA, 5.8S rRNASaccharomyces cerevisiaeYeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.82020-03-04
377AZY|1|E+ 7AZY|1|G25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiae S288CContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8772021-05-19
384U4R|1|1+ 4U4R|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
394U4R|1|5+ 4U4R|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
404U3U|1|5+ 4U3U|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
414U3U|1|1+ 4U3U|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
425T62|1|A+ 5T62|1|C25S Ribosomal RNA, 5.8S Ribosomal RNASaccharomyces cerevisiaeNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.12017-02-08
434U3M|1|1+ 4U3M|1|425s rRNA, 5.8s rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
444U4Q|1|5+ 4U4Q|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
454U3M|1|5+ 4U3M|1|825s rRNA, 5.8s rRNASaccharomyces cerevisiaeCrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
464U4U|1|1+ 4U4U|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
474U4Q|1|1+ 4U4Q|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
486YLG|1|1+ 6YLG|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiaeRix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY32020-07-29
494U4U|1|5+ 4U4U|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
504U52|1|5+ 4U52|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
514U52|1|1+ 4U52|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
526Q8Y|1|BQ+ 6Q8Y|1|BS25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.12019-03-13
537OHQ|1|1+ 7OHQ|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.12021-11-03
545M1J|1|14+ 5M1J|1|4425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeNonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
556T7T|1|C1+ 6T7T|1|C325S rRNA, 5.8S rRNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.12019-12-25
567B7D|1|LA+ 7B7D|1|LC25S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.32021-03-10
574U6F|1|1+ 4U6F|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
584U6F|1|5+ 4U6F|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
596QIK|1|A+ 6QIK|1|y25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.12019-06-26
606YLH|1|1+ 6YLH|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiaeRix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.12020-07-29
616XIR|1|1+ 6XIR|1|435S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
626TNU|1|BQ+ 6TNU|1|BS25S rRNA, 5.8S rRNASaccharomyces cerevisiaeYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.12020-04-22
634U4N|1|5+ 4U4N|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
644U4Z|1|5+ 4U4Z|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
654U4N|1|1+ 4U4N|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
664U4Z|1|1+ 4U4Z|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
676RZZ|1|A+ 6RZZ|1|y25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.22019-06-26
686T7I|1|C1+ 6T7I|1|C325S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeStructure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.22019-12-25
694U3N|1|5+ 4U3N|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
704U4Y|1|5+ 4U4Y|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
717BTB|1|1+ 7BTB|1|2RDN25-1 rRNA, RDN5.8-1 rRNASaccharomyces cerevisiaeCryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.222020-10-28
724U3N|1|1+ 4U3N|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
737BT6|1|1+ 7BT6|1|2RDN25-1 rRNA, RDN5.8-1 rRNASaccharomyces cerevisiaeCryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.122020-10-28
744U55|1|5+ 4U55|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
756R87|1|1+ 6R87|1|425S rRNA, 5.8S rRNASaccharomyces cerevisiaeYeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.42019-06-26
764U4Y|1|1+ 4U4Y|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
773JCT|1|1+ 3JCT|1|2RDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeCryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01
786S47|1|AA+ 6S47|1|AC28S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.282019-07-24
794U51|1|5+ 4U51|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
804U51|1|1+ 4U51|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
814U55|1|1+ 4U55|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
824U50|1|5+ 4U50|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
834U50|1|1+ 4U50|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
845H4P|1|1+ 5H4P|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeStructural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.072017-01-25
856M62|1|1+ 6M62|1|2RDN25-1 rRNA, RDN58-1 rRNASaccharomyces cerevisiaeCryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.22020-08-26
866R86|1|1+ 6R86|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeYeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.42019-07-31
876Z6K|1|C1+ 6Z6K|1|C325S rRNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.42020-07-29
886Z6J|1|C1+ 6Z6J|1|C325S rRNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.42020-07-29
895JUP|1|B+ 5JUP|1|C25S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05
906HD7|1|1+ 6HD7|1|4Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.42018-12-19
916RI5|1|A+ 6RI5|1|y25S RNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.32019-06-26
926QT0|1|A+ 6QT0|1|y25S rRNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.42019-06-26
936N8M|1|A+ 6N8M|1|CSaccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S RNASaccharomyces cerevisiaeCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
946N8O|1|A+ 6N8O|1|CSaccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
954U53|1|1+ 4U53|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
967OF1|1|1+ 7OF1|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.12021-11-03
974U53|1|5+ 4U53|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
986SV4|1|YQ+ 6SV4|1|YS25S rRNA, 5.8S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
997OH3|1|1+ 7OH3|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.42021-11-03
1006SV4|1|BQ+ 6SV4|1|BS25S rRNA, 5.8S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
1016SV4|1|ZQ+ 6SV4|1|ZS25S rRNA, 5.8S rRNASaccharomyces cerevisiaeThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.32020-03-04
1025APO|1|5+ 5APO|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.412015-12-16
1036QTZ|1|A+ 6QTZ|1|y25S rRNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.52019-06-26
1046N8J|1|1+ 6N8J|1|3Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNASaccharomyces cerevisiaeCryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.52019-03-13
1054U56|1|1+ 4U56|1|425S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1064U56|1|5+ 4U56|1|825S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeCrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
1076ELZ|1|1+ 6ELZ|1|225S ribosomal RNA, 5.8S ribosomal RNASaccharomyces cerevisiaeState E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32017-12-27
1087OHX|1|1+ 7OHX|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AELECTRON MICROSCOPY3.32021-11-03
1096EM3|1|125S ribosomal RNASaccharomyces cerevisiaeState A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.22017-12-27
1107OHW|1|1+ 7OHW|1|225S rRNA, 5.8S rRNASaccharomyces cerevisiae S288CNog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BELECTRON MICROSCOPY3.52021-11-03

Release history

Release3.203
Date2021-11-03

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16EM3|1|1State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.21250
25JUP|1|B+5JUP|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53309
36WOO|1|5+6WOO|1|8CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.93271
46XIR|1|1+6XIR|1|4Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.23113
56QT0|1|A+6QT0|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.43164
66R86|1|1+6R86|1|4Yeast Vms1-60S ribosomal subunit complex (post-state)ELECTRON MICROSCOPY3.43260
76SV4|1|ZQ+6SV4|1|ZSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33127
86SV4|1|YQ+6SV4|1|YSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33127
96SV4|1|BQ+6SV4|1|BSThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.33127
105NDV|1|5+5NDV|1|8Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33087
115OBM|1|5+5OBM|1|8Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43134
124U50|1|5+4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
134U53|1|5+4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
144U51|1|5+4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
154U6F|1|5+4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
164U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
174U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
184U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
194U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
204U56|1|5+4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
214U55|1|5+4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
224U4Z|1|5+4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
234U4N|1|5+4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
245TGA|1|5+5TGA|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33152
254U3N|1|5+4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
265I4L|1|5+5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
275LYB|1|5+5LYB|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253150
284V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
294U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
304U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
314U4Y|1|5+4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
325TGM|1|5+5TGM|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53150
335DGV|1|5+5DGV|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13149
345DGE|1|5+5DGE|1|8Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453150
355DC3|1|5+5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253169
365DAT|1|5+5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153169
375DGF|1|5+5DGF|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33169
385MEI|1|AR+5MEI|1|ATCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53149
395ON6|1|AR+5ON6|1|ATCrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13149
406HHQ|1|AR+6HHQ|1|ATCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13147
415TBW|1|AR+5TBW|1|ATCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
425NDV|1|1+5NDV|1|4Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33078
437B7D|1|LA+7B7D|1|LCYeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.33223
445H4P|1|1+5H4P|1|4Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.073091
455M1J|1|14+5M1J|1|44Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.33295
465OBM|1|1+5OBM|1|4Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.43100
475TGM|1|1+5TGM|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53149
485DGV|1|1+5DGV|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13148
495DGE|1|1+5DGE|1|4Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453149
505DC3|1|1+5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253149
515TBW|1|1+5TBW|1|4Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
524U56|1|1+4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
534U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
544U4Y|1|1+4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
554U3N|1|1+4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
564U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
574U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
584V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
595LYB|1|1+5LYB|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253149
604U6F|1|1+4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
614U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
624U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
634U51|1|1+4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
644U53|1|1+4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
654U50|1|1+4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
664U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
674U4Z|1|1+4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
684U55|1|1+4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
694U4N|1|1+4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
705I4L|1|1+5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
715TGA|1|1+5TGA|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33151
725MEI|1|1+5MEI|1|4Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53149
735ON6|1|1+5ON6|1|4Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.13149
746HHQ|1|1+6HHQ|1|4Crystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
755DAT|1|1+5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153149
765DGF|1|1+5DGF|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33149
776S47|1|AA+6S47|1|ACSaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.283149
786TB3|1|BQ+6TB3|1|BSyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.83223
796SNT|1|1+6SNT|1|3Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.83184
806T4Q|1|C1+6T4Q|1|C3Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.63184
816T7T|1|C1+6T7T|1|C3Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.13184
826T7I|1|C1+6T7I|1|C3Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.23184
836TNU|1|BQ+6TNU|1|BSYeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.13184
847AZY|1|E+7AZY|1|GContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.8773161
856Q8Y|1|BQ+6Q8Y|1|BSCryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.13161
866HD7|1|1+6HD7|1|4Cryo-EM structure of the ribosome-NatA complexELECTRON MICROSCOPY3.43335
875T62|1|A+5T62|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.13200
886N8O|1|A+6N8O|1|CCryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53201
896QTZ|1|A+6QTZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.53146
906RI5|1|A+6RI5|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.33147
916Z6K|1|C1+6Z6K|1|C3Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.43127
926Z6J|1|C1+6Z6J|1|C3Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.43127
936R87|1|1+6R87|1|4Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)ELECTRON MICROSCOPY3.43316
945APO|1|5+5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
956RZZ|1|A+6RZZ|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.23146
966QIK|1|A+6QIK|1|yCryo-EM structures of Lsg1-TAP pre-60S ribosomal particlesELECTRON MICROSCOPY3.13146
976N8M|1|A+6N8M|1|CCryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53203
986YLH|1|1+6YLH|1|2Rix1-Rea1 pre-60S particle - full composite structureELECTRON MICROSCOPY3.13039
996YLG|1|1+6YLG|1|2Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY33039
1006N8J|1|1+6N8J|1|3Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunitELECTRON MICROSCOPY3.53047
1017OF1|1|1+7OF1|1|2Nog1-TAP associated immature ribosomal particle population A from S. cerevisiaeELECTRON MICROSCOPY3.12787
1027OHQ|1|1+7OHQ|1|2Nog1-TAP associated immature ribosomal particle population C from S. cerevisiaeELECTRON MICROSCOPY3.13053
1037OH3|1|1+7OH3|1|2Nog1-TAP associated immature ribosomal particle population B from S. cerevisiaeELECTRON MICROSCOPY3.43013
1043JCT|1|1+3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083058
1057BTB|1|1+7BTB|1|2Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)ELECTRON MICROSCOPY3.223058
1066M62|1|1+6M62|1|2Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state.ELECTRON MICROSCOPY3.22972
1077BT6|1|1+7BT6|1|2Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)ELECTRON MICROSCOPY3.122962
1086ELZ|1|1+6ELZ|1|2State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmesELECTRON MICROSCOPY3.32457
1097OHX|1|1+7OHX|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population AELECTRON MICROSCOPY3.31561
1107OHW|1|1+7OHW|1|2Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population BELECTRON MICROSCOPY3.51639