#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A5+ 4V88|1|A8 (rep)25S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24V88|1|A1+ 4V88|1|A425S rRNA, 5.8S rRNAThe structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
34U4Q|1|5+ 4U4Q|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
44U3U|1|1+ 4U3U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
54U4R|1|1+ 4U4R|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
64U4R|1|5+ 4U4R|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
74U52|1|5+ 4U52|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
84U4U|1|1+ 4U4U|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
94U4Z|1|1+ 4U4Z|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
104U4Q|1|1+ 4U4Q|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
115I4L|1|5+ 5I4L|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
124U3U|1|5+ 4U3U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
134U3M|1|1+ 4U3M|1|425s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
144U55|1|1+ 4U55|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
154U4N|1|1+ 4U4N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
164U4U|1|5+ 4U4U|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
175FCJ|1|5+ 5FCJ|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
184U52|1|1+ 4U52|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
195DC3|1|5+ 5DC3|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
204U4Y|1|5+ 4U4Y|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
215FCJ|1|1+ 5FCJ|1|425S ribosomal RNA, 5.8S ribosomal RNAStructure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
224U3N|1|5+ 4U3N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
235DAT|1|1+ 5DAT|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
244U4N|1|5+ 4U4N|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
254U6F|1|1+ 4U6F|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
264U50|1|5+ 4U50|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
274U50|1|1+ 4U50|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
284U55|1|5+ 4U55|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
294U3M|1|5+ 4U3M|1|825s rRNA, 5.8s rRNACrystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
305I4L|1|1+ 5I4L|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
314U4Z|1|5+ 4U4Z|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
324U3N|1|1+ 4U3N|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
334U53|1|5+ 4U53|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
345FCI|1|1+ 5FCI|1|425S ribosomal RNA, 5.8S ribosomal RNAStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
354U4Y|1|1+ 4U4Y|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
365APO|1|5+ 5APO|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.412015-12-16
375DAT|1|5+ 5DAT|1|825S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
384U51|1|1+ 4U51|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
395DC3|1|1+ 5DC3|1|425S ribosomal RNA, 5.8S ribosomal RNAComplex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
404U51|1|5+ 4U51|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
414U6F|1|5+ 4U6F|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
424U53|1|1+ 4U53|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
434U56|1|1+ 4U56|1|425S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
445FCI|1|5+ 5FCI|1|825S ribosomal RNA, 5.8S ribosomal RNAStructure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
454U56|1|5+ 4U56|1|825S ribosomal RNA, 5.8S ribosomal RNACrystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
463JCT|1|1+ 3JCT|1|2RDN25-1 rRNA, RDN58-1 rRNACryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01

Release history

Release2.912.922.932.942.95
Date2016-09-022016-09-092016-09-162016-09-232016-09-30

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15DAT|1|5+5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153169
25DC3|1|5+5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253169
34U4Y|1|5+4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
44V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
54U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
64U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
74U3N|1|5+4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
84U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
94U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
104U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
114U51|1|5+4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
124U6F|1|5+4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
134U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
144U50|1|5+4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
154U53|1|5+4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
164U4Z|1|5+4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
174U55|1|5+4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
184U56|1|5+4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
194U4N|1|5+4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
205I4L|1|5+5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
215FCJ|1|5+5FCJ|1|8Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13150
225FCI|1|5+5FCI|1|8Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43150
235APO|1|5+5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
245FCI|1|1+5FCI|1|4Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43149
254U56|1|1+4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
264U55|1|1+4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
275I4L|1|1+5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
284U4N|1|1+4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
294U4Z|1|1+4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
305DAT|1|1+5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153149
315FCJ|1|1+5FCJ|1|4Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13149
324U50|1|1+4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
334U53|1|1+4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
344U51|1|1+4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
354U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
364U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
374U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
384U6F|1|1+4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
394U3N|1|1+4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
404V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
414U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
424U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
434U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
444U4Y|1|1+4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
455DC3|1|1+5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253149
463JCT|1|1+3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083058