Equivalence class NR_3.5_92081.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FQ5|1|A (rep) | SGRNA | synthetic construct | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-ray diffraction | 2.14 | 2016-03-23 | |||
| 2 | 5FW2|1|A | SGRNA | synthetic construct | Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.68 | 2016-06-15 | |||
| 3 | 5VW1|1|C | sgRNA | Listeria monocytogenes | Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex | X-ray diffraction | 2.6 | 2017-06-28 | |||
| 4 | 4UN4|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-ray diffraction | 2.37 | 2014-07-23 | |||
| 5 | 4UN5|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-ray diffraction | 2.4 | 2014-07-23 | |||
| 6 | 5FW3|1|A | SGRNA | synthetic construct | Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-ray diffraction | 2.7 | 2016-06-15 | |||
| 7 | 4UN3|1|A | SGRNA | synthetic construct | Crystal structure of Cas9 bound to PAM-containing DNA target | X-ray diffraction | 2.59 | 2014-07-23 | |||
| 8 | 5FW1|1|A | SGRNA | synthetic construct | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-ray diffraction | 2.5 | 2016-04-20 |
Release history
| Release | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 | 2018-06-01 | 2018-06-08 | 2018-06-15 | 2018-06-22 | 2018-06-29 | 2018-07-06 | 2018-07-13 | 2018-07-20 | 2018-07-27 | 2018-08-03 | 2018-08-10 | 2018-08-17 | 2018-08-24 | 2018-08-31 | 2018-09-07 | 2018-09-14 | 2018-09-21 | 2018-09-28 | 2018-10-05 | 2018-10-12 | 2018-10-19 | 2018-10-26 | 2018-11-02 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-07 | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.5_92081.5 | NR_3.5_43299.1 | 3.67 | (1) 5VW1|1|C | (7) 4UN5|1|A, 5FW3|1|A, 4UN4|1|A, 5FW2|1|A, 4UN3|1|A, 5FW1|1|A, 5FQ5|1|A | (0) |
| NR_3.5_92081.5 | NR_3.5_92081.6 | 3.67 | (7) 4UN4|1|A, 4UN5|1|A, 5FQ5|1|A, 5FW2|1|A, 5FW3|1|A, 4UN3|1|A, 5FW1|1|A | (1) 5VW1|1|C | (3) 6AEB|1|A, 6AEB|1|E, 6AEG|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4UN5|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target containing mismatches at positions 1-3 | X-RAY DIFFRACTION | 2.4 | 82 |
| 2 | 5FQ5|1|A | Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing | X-RAY DIFFRACTION | 2.14 | 83 |
| 3 | 4UN4|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target with mismatches at positions 1-2 | X-RAY DIFFRACTION | 2.37 | 82 |
| 4 | 5FW1|1|A | Crystal structure of SpyCas9 variant VQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.5 | 81 |
| 5 | 5FW3|1|A | Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA | X-RAY DIFFRACTION | 2.7 | 81 |
| 6 | 5FW2|1|A | Crystal structure of SpCas9 variant EQR bound to sgRNA and TGAG PAM target DNA | X-RAY DIFFRACTION | 2.68 | 81 |
| 7 | 4UN3|1|A | Crystal structure of Cas9 bound to PAM-containing DNA target | X-RAY DIFFRACTION | 2.59 | 81 |
| 8 | 5VW1|1|C | Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex | X-RAY DIFFRACTION | 2.6 | 73 |
Coloring options: