#IFECompound(s)RNA source organismTitleMethodResolutionDate
11VY4|1|BA (rep)23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
24V8I|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
34V9R|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
44W2H|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
54V9S|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
64W2F|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
74W2G|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
84W2I|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
94V8I|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72014-07-09
104V9R|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32014-07-09
114V9S|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
124V95|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
131VY5|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
141VY4|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62014-08-20
151VY7|1|BA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
164W2H|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72014-10-15
174V8H|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of HPF bound to the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
184V8A|1|BA23S ribosomal RNAThermus thermophilusThe structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.X-RAY DIFFRACTION3.22014-07-09
194V8G|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
204W2F|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42014-10-15
214V8G|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
224W2I|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72014-10-15
231VY6|1|BA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
244V8A|1|AA23S ribosomal RNAThermus thermophilusThe structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.X-RAY DIFFRACTION3.22014-07-09
254V83|1|BA23S ribosomal RNAThermus thermophilusCrystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52014-07-09
264V83|1|DA23S ribosomal RNAThermus thermophilusCrystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52014-07-09
274V8H|1|BA23S Ribosomal RNAThermus thermophilusCrystal structure of HPF bound to the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
284V95|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
294W2G|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552014-10-15
301VY5|1|DA23S Ribosomal RNAThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552014-08-20
314V9H|1|BA23S ribosomal RNAThermus thermophilusCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862014-07-09
321VY7|1|DA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82014-08-20
334LNT|1|YA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
344V6F|1|DA23S RRNAThermus thermophilusElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
354LT8|1|YA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.142014-08-06
364V84|1|DA23S ribosomal RNAThermus thermophilusCrystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42014-07-09
374W2E|1|A23S Ribosomal RNAThermus thermophilusCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92014-10-01
384V84|1|BA23S ribosomal RNAThermus thermophilusCrystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42014-07-09
394V8B|1|BARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
404V9N|1|DA23S ribosomal RNAThermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
414L47|1|RA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
424V5D|1|DA23S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
434V9N|1|BA23S ribosomal RNAThermus thermophilusCrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42014-07-09
444LT8|1|RA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.142014-08-06
454V87|1|AARNA (2909-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12014-07-09
461VY6|1|DA23S Ribosomal RNA, Cytidine-PuromycinThermus thermophilusCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92014-08-20
474V5D|1|BA23S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52014-07-09
484V9I|1|DA23S ribosomal RNAThermus thermophilusCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
494V9I|1|BA23S ribosomal RNAThermus thermophilusCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32014-07-09
504V5E|1|BA23S RIBOSOMAL RNAThermus thermophilusInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
514V8C|1|AARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
524V9Q|1|AA23S ribosomal RNAThermus thermophilusCrystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42014-07-09
534V5E|1|DA23S RIBOSOMAL RNAThermus thermophilusInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452014-07-09
544V9Q|1|CA23S ribosomal RNAThermus thermophilusCrystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42014-07-09
554V8N|1|DA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12014-07-09
564V67|1|DA23S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
574V8B|1|DARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32014-07-09
584LNT|1|RA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942014-08-06
594V8N|1|BA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12014-07-09
604V5C|1|DA23S Ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
614V67|1|BA23S RRNAThermus thermophilusCrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32014-07-09
624V87|1|DARNA (2909-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12014-07-09
634V8D|1|BARNA (2912-MER)Thermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
644L47|1|YA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222014-08-06
654V5C|1|BA23S Ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32014-07-09
664V6G|1|DA23S ribosomal RNAThermus thermophilusInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52014-07-09
674V7Y|1|BA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
684V6F|1|AA23S RIBOSOMAL RNAThermus thermophilusElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12014-07-09
694V7X|1|BA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
704V7J|1|BARNA (2848-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
714LSK|1|YA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.482014-08-06
724V7Y|1|DA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32014-07-09
734V7J|1|AARNA (2848-MER)Thermus thermophilusStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32014-07-09
744V7X|1|DA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32014-07-09
754V8F|1|AARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
764V7W|1|BA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
774V7M|1|BA23S ribosomal RNAThermus thermophilusThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452014-07-09
784V7W|1|DA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32014-07-09
794V8E|1|AARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32014-07-09
804V6A|1|BA23S ribosomal RNAThermus thermophilusStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
811VVJ|1|YA23S rRNA, RNA (5'-R(*CP*CP*(PPU))-3')Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.442014-08-06
824V90|1|BA23S RIBOSOMAL RNAThermus thermophilusThermus thermophilus RibosomeX-RAY DIFFRACTION2.952014-07-09
834V9B|1|BA23S ribosomal RNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
844V5K|1|DA23S ribosomal RNAThermus thermophilusStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
854V8D|1|DARNA (2912-MER)Thermus thermophilusStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32014-07-09
864LSK|1|RA23S rRNA, tRNA acceptor end mimicThermus thermophilusCrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.482014-08-06
874V8C|1|BARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
884V5K|1|BA23S ribosomal RNAThermus thermophilusStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22014-07-09
894V5J|1|DA23S RIBOSOMAL RNAThermus thermophilusStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
904V5J|1|BA23S RIBOSOMAL RNAThermus thermophilusStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12014-07-09
911VVJ|1|RA23S rRNA, RNA (5'-R(*CP*CP*(PPU))-3')Thermus thermophilusCrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.442014-08-06
924V8X|1|BA23S ribosomal RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
934V63|1|BA23S RRNAThermus thermophilusStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212014-07-09
944V8E|1|CARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32014-07-09
954V8X|1|DA23S ribosomal RNAThermus thermophilusStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352014-07-09
964V63|1|DA23S RRNAThermus thermophilusStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212014-07-09
974V6G|1|BA23S ribosomal RNAThermus thermophilusInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52014-07-09
984V51|1|BA23S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
994V51|1|DA23S RIBOSOMAL RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82014-07-09
1004V7M|1|DA23S ribosomal RNAThermus thermophilusThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452014-07-09
1014V9A|1|BA23S ribosomal RNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
1024V8F|1|DARNA (2912-MER)Thermus thermophilusCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.32014-07-09
1034V9K|1|DA23S ribosomal RNAThermus thermophilus70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52014-07-09
1044V9L|1|BA23S ribosomal RNAThermus thermophilus70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52014-07-09
1054V7Z|1|DA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with telithromycin.X-RAY DIFFRACTION3.12014-07-09
1064V7Z|1|BA23S ribosomal RNAThermus thermophilusStructure of the Thermus thermophilus 70S ribosome complexed with telithromycin.X-RAY DIFFRACTION3.12014-07-09
1074V9B|1|DA23S ribosomal RNAThermus thermophilusCrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12014-07-09
1084V6A|1|DA23S ribosomal RNAThermus thermophilusStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1094V9L|1|DA23S ribosomal RNAThermus thermophilus70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52014-07-09
1104V5P|1|DA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
1114V9A|1|DA23S ribosomal RNAThermus thermophilusCrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32014-07-09
1124V5P|1|BA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
1134V9K|1|BA23S ribosomal RNAThermus thermophilus70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52014-07-09
1144V8Q|1|AA23S ribosomal RNAThermus thermophilusComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
1154V5R|1|BA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1164V5R|1|DA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1174V5L|1|BA23S RIBOSOMAL RNAThermus thermophilusThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.12014-07-09
1184V7L|1|BA23S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09
1194V5S|1|BA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1204V5Q|1|BA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
1214V5S|1|DA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12014-07-09
1224V5Q|1|DA23S RIBOSOMAL RNAThermus thermophilusThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12014-07-09
1234V5A|1|BA23S ribosomal RNAThermus thermophilusStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
1244V5A|1|DA23S ribosomal RNAThermus thermophilusStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52014-07-09
1254V7L|1|DA23S ribosomal RNAThermus thermophilusThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32014-07-09

Release history

Release2.02.12.22.32.42.52.6
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V90|1|BAThermus thermophilus RibosomeX-RAY DIFFRACTION2.952901
24V9H|1|BACrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.862859
34V6A|1|BAStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.12767
44V6A|1|DAStructure of EF-P bound to the 70S ribosome.X-RAY DIFFRACTION3.12777
54V9L|1|BA70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
64V9L|1|DA70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
74V9K|1|DA70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
84V9K|1|BA70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.X-RAY DIFFRACTION3.52879
94V5L|1|BAThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.12901
104V8Q|1|AAComplex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosomeX-RAY DIFFRACTION3.12901
114V5S|1|DAThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12901
124V5S|1|BAThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12901
134V5Q|1|BAThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12901
144V5Q|1|DAThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12901
154V5P|1|BAThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12901
164V5P|1|DAThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.12901
174V5R|1|BAThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12901
184V5R|1|DAThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.12901
194V7Z|1|BAStructure of the Thermus thermophilus 70S ribosome complexed with telithromycin.X-RAY DIFFRACTION3.12725
204V7Z|1|DAStructure of the Thermus thermophilus 70S ribosome complexed with telithromycin.X-RAY DIFFRACTION3.12725
214V7W|1|DAStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32725
224V7W|1|BAStructure of the Thermus thermophilus ribosome complexed with chloramphenicol.X-RAY DIFFRACTION32725
234V7X|1|BAStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32725
244V7X|1|DAStructure of the Thermus thermophilus ribosome complexed with erythromycin.X-RAY DIFFRACTION32725
254V7Y|1|DAStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32725
264V7Y|1|BAStructure of the Thermus thermophilus 70S ribosome complexed with azithromycin.X-RAY DIFFRACTION32725
274V51|1|DAStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82772
284V51|1|BAStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.82772
294V5A|1|DAStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52767
304V5A|1|BAStructure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMetX-RAY DIFFRACTION3.52767
314V7L|1|DAThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32800
324V5C|1|BAStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32807
334V5C|1|DAStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.32807
344V5D|1|DAStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52807
354V5D|1|BAStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.52807
364V7M|1|BAThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452789
374V7L|1|BAThe structures of viomycin bound to the 70S ribosome.X-RAY DIFFRACTION32800
384V9I|1|BACrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32807
394V9I|1|DACrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.32807
404V5K|1|BAStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22807
414V5K|1|DAStructure of cytotoxic domain of colicin E3 bound to the 70S ribosomeX-RAY DIFFRACTION3.22807
424V5J|1|BAStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12901
434V5J|1|DAStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.12901
444V8X|1|BAStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352848
454V8N|1|DAThe crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12848
464V8N|1|BAThe crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.X-RAY DIFFRACTION3.12848
474V7J|1|AAStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32848
484V7J|1|BAStructure of RelE nuclease bound to the 70S ribosome (precleavage state)X-RAY DIFFRACTION3.32848
494V8X|1|DAStructure of Thermus thermophilus ribosomeX-RAY DIFFRACTION3.352848
504V5E|1|BAInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452886
514V5E|1|DAInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.452886
524V7M|1|DAThe structures of Capreomycin bound to the 70S ribosome.X-RAY DIFFRACTION3.452775
534W2E|1|ACrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.92873
544V9S|1|DACrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.12714
554V9R|1|DACrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32714
561VY6|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92800
571VY5|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552800
581VY4|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62800
594W2F|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42800
604W2G|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552800
614W2H|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72800
621VY7|1|DACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82800
634W2I|1|DACrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72800
644W2I|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.72822
651VY7|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.82819
664W2H|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.72822
671VY4|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.62819
684W2G|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.552819
691VY5|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.552819
701VY6|1|BACrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.92819
714W2F|1|BACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.42871
724V9R|1|BACrystal structure of antibiotic DITYROMYCIN bound to 70S ribosomeX-RAY DIFFRACTION32731
734V9S|1|BACrystal structure of antibiotic GE82832 bound to 70S ribosomeX-RAY DIFFRACTION3.12731
744V9Q|1|CACrystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42832
754V9Q|1|AACrystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.X-RAY DIFFRACTION3.42832
764V83|1|BACrystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52760
774V83|1|DACrystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.52760
784V84|1|BACrystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42760
794V84|1|DACrystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.X-RAY DIFFRACTION3.42760
804V63|1|BAStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212879
814V63|1|DAStructural basis for translation termination on the 70S ribosome.X-RAY DIFFRACTION3.212879
824V67|1|DACrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32879
834V67|1|BACrystal structure of a translation termination complex formed with release factor RF2.X-RAY DIFFRACTION32879
844V9N|1|DACrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42789
854V9N|1|BACrystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.X-RAY DIFFRACTION3.42789
864V8I|1|DACrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72798
874V8I|1|BACrystal structure of YfiA bound to the 70S ribosome.X-RAY DIFFRACTION2.72827
884V8A|1|BAThe structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.X-RAY DIFFRACTION3.22827
894V8A|1|AAThe structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.X-RAY DIFFRACTION3.22827
904V8H|1|BACrystal structure of HPF bound to the 70S ribosome.X-RAY DIFFRACTION3.12837
914V8H|1|DACrystal structure of HPF bound to the 70S ribosome.X-RAY DIFFRACTION3.12814
924V8G|1|BACrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32809
934V8G|1|DACrystal structure of RMF bound to the 70S ribosome.X-RAY DIFFRACTION32814
944V95|1|BACrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22752
954V95|1|DACrystal structure of YAEJ bound to the 70S ribosomeX-RAY DIFFRACTION3.22722
964V6G|1|BAInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52885
974V9B|1|DACrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12906
984V9A|1|DACrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32909
994V8F|1|DACrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.32907
1004V8E|1|CACrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32907
1014V8D|1|DAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32907
1024V87|1|DACrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12907
1034V8B|1|DACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32907
1044V8C|1|BACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32909
1054V6F|1|AAElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12909
1064V6F|1|DAElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.12912
1074V8F|1|AACrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.32912
1084V8E|1|AACrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.32912
1094V8D|1|BAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION32912
1104V87|1|AACrystal structure analysis of ribosomal decoding.X-RAY DIFFRACTION3.12912
1114V8B|1|BACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).X-RAY DIFFRACTION32912
1124V8C|1|AACrystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).X-RAY DIFFRACTION3.32912
1134V9B|1|BACrystal Structure of the 70S ribosome with tigecycline.X-RAY DIFFRACTION3.12912
1144V9A|1|BACrystal Structure of the 70S ribosome with tetracycline.X-RAY DIFFRACTION3.32912
1154LT8|1|YACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.142883
1164L47|1|YACrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222883
1174LNT|1|RACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942882
1184LNT|1|YACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION2.942883
1191VVJ|1|YACrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.442882
1201VVJ|1|RACrystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.442883
1214LT8|1|RACrystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the RibosomeX-RAY DIFFRACTION3.142882
1224V6G|1|DAInitiation complex of 70S ribosome with two tRNAs and mRNA.X-RAY DIFFRACTION3.52886
1234LSK|1|YACrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.482883
1244LSK|1|RACrystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the RibosomeX-RAY DIFFRACTION3.482882
1254L47|1|RACrystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the RibosomeX-RAY DIFFRACTION3.222882