#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V88|1|A6 (rep)Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
25TBW|1|sRSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A2Small subunit ribosomal RNA18S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
45TBW|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
56HHQ|1|sRSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.12019-02-20
65OBM|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.42017-12-13
75I4L|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
85MEI|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.52017-06-28
95NDW|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
105LYB|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
115I4L|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-ray diffraction3.12016-06-22
125MEI|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Agelastatin A bound to the 80S ribosomeX-ray diffraction3.52017-06-28
135OBM|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-ray diffraction3.42017-12-13
145ON6|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.12018-02-28
156HHQ|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of compound C45 bound to the yeast 80S ribosomeX-ray diffraction3.12019-02-20
165NDW|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
175LYB|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-ray diffraction3.252016-11-23
185ON6|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of haemanthamine bound to the 80S ribosomeX-ray diffraction3.12018-02-28
195NDV|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.32017-12-13
205NDV|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-ray diffraction3.32017-12-13
215NDG|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
225NDG|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-ray diffraction3.72017-12-13
235TGM|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
245TGM|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.52017-01-18
254V7R|1|A1Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome.X-ray diffraction42014-07-09
264V7R|1|C1Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome.X-ray diffraction42014-07-09
275DAT|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
285TGA|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
295DGE|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
305DGV|1|6Small subunit ribosomal RNASaccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
315DGF|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
325DC3|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
335DAT|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing eIF5AX-ray diffraction3.152016-08-31
345TGA|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-ray diffraction3.32016-11-23
355DGV|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288c RDN37-1 miscRNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.12016-12-14
365DGE|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-ray diffraction3.452017-01-25
375DGF|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-ray diffraction3.32016-12-14
385DC3|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Complex of yeast 80S ribosome with non-modified eIF5AX-ray diffraction3.252016-06-01
396T4Q|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
404U4R|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
416WOO|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
426TB3|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
436SNT|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
444U3U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
454U4R|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
467A1G|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexElectron microscopy32020-10-14
476ZVI|1|hSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Mbf1-ribosome complexElectron microscopy32020-09-09
484U3U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
494U3M|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
504U4Q|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
514U4U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
524U52|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
534U3M|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
544U6F|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
554U4N|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
564U52|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
574U4U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
584U4Q|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
596Q8Y|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexElectron microscopy3.12019-03-13
604U4Z|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
614U6F|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
627B7D|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiae S288CEukaryaRF01960Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsElectron microscopy3.32021-03-10
634U4Y|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
644U3N|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
656SV4|1|2bSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
666SV4|1|2cSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
674U55|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
686XIR|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressElectron microscopy3.22020-08-26
696T7T|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on poly(A) tract.Electron microscopy3.12019-12-25
705M1J|1|22Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Nonstop ribosomal complex bound with Dom34 and Hbs1Electron microscopy3.32017-01-18
714U4Z|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
724U4N|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Edeine bound to the yeast 80S ribosomeX-ray diffraction3.12014-10-22
734U50|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
744U51|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
756T7I|1|C2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.Electron microscopy3.22019-12-25
764U3N|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
774U4Y|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
784U51|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
796TNU|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.Electron microscopy3.12020-04-22
804U55|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
816S47|1|BASmall subunit ribosomal RNA18S rRNA (1707-MER)Saccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1Electron microscopy3.282019-07-24
826FAI|1|2Small subunit ribosomal RNA20S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunitElectron microscopy3.42018-02-28
834U53|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
845JUP|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)Electron microscopy3.52016-10-05
854U50|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-ray diffraction3.22014-10-22
866Z6K|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesElectron microscopy3.42020-07-29
876Z6J|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionElectron microscopy3.42020-07-29
886RBD|1|2Small subunit ribosomal RNA20S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesElectron microscopy3.472019-06-26
894U53|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-ray diffraction3.32014-10-22
906SV4|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The cryo-EM structure of SDD1-stalled collided trisome.Electron microscopy3.32020-03-04
914U56|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
924U56|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-ray diffraction3.452014-10-22
935MC6|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeElectron microscopy3.82017-01-18
946T83|1|2bSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy42019-12-25
956T83|1|aSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast disome (di-ribosome) stalled on poly(A) tract.Electron microscopy42019-12-25
965JUO|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)Electron microscopy42016-10-05
975JUT|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)Electron microscopy42016-10-05
985JUU|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)Electron microscopy42016-10-05
996RBE|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesElectron microscopy3.82019-06-26
1006EML|1|2Small subunit ribosomal RNApre-18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiaeElectron microscopy3.62017-11-29
1016GQB|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)Electron microscopy3.92018-07-11
1026Y7C|1|2Small subunit ribosomal RNA20S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)Electron microscopy3.82020-03-18
1036GQV|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)Electron microscopy42018-07-11
1044U4O|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
1054U4O|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Geneticin bound to the yeast 80S ribosomeX-ray diffraction3.62014-10-22
1065LL6|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiationElectron microscopy3.92017-04-12

Release history

Release3.1743.1753.176
Date2021-04-142021-04-212021-04-28

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16SV4|1|2cThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
26SV4|1|2bThe cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
36ZVI|1|hMbf1-ribosome complexELECTRON MICROSCOPY31758
46XIR|1|2Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.21708
54V7R|1|C1Yeast 80S ribosome.X-RAY DIFFRACTION41789
65NDV|1|6Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31683
74U4O|1|6Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61791
84U53|1|6Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31795
94U50|1|6Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
104U4Z|1|6Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
114U55|1|6Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
124U51|1|6Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
135I4L|1|6Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
144U4N|1|6Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
154U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
164U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
174U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
185ON6|1|6Crystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11783
195MEI|1|6Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51783
204U56|1|6Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451795
215TGM|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51796
225DGV|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11796
235LYB|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251796
244V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
255TGA|1|6Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31796
264U6F|1|6Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11795
274U3N|1|6Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
284U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
294U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
304U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
314U4Y|1|6Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21795
326HHQ|1|sRCrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11783
335TBW|1|sRCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31783
345DC3|1|6Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251796
355DGE|1|6Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451796
365DGF|1|6Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31796
375DAT|1|6Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151796
385OBM|1|6Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41739
395NDG|1|6Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71700
405NDW|1|6Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71736
414V7R|1|A1Yeast 80S ribosome.X-RAY DIFFRACTION41789
425NDG|1|2Crystal structure of geneticin (G418) bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71688
435NDW|1|2Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.71770
445OBM|1|2Crystal structure of Gentamicin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.41712
455DAT|1|2Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.151782
465DGF|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.31782
475DGE|1|2Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.451782
485DC3|1|2Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.251782
495DGV|1|2Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.11782
506HHQ|1|ACrystal structure of compound C45 bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
515TBW|1|ACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31781
525LYB|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.251782
534V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
545TGA|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.31782
554U6F|1|2Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
564U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
574U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
584U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
594U3N|1|2Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
605I4L|1|2Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11781
614U4N|1|2Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
624U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
634U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
644U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
654U55|1|2Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
664U51|1|2Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
674U4Y|1|2Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
684U4Z|1|2Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.11750
694U50|1|2Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.21750
704U53|1|2Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31750
715MEI|1|ACrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.51781
725ON6|1|ACrystal structure of haemanthamine bound to the 80S ribosomeX-RAY DIFFRACTION3.11781
734U56|1|2Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.451750
745TGM|1|2Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.51782
754U4O|1|2Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.61750
765NDV|1|2Crystal structure of Paromomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.31712
775JUP|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.51781
785JUT|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY41781
795JUO|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY41781
807A1G|1|2Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY31771
816GQV|1|2Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY41776
826GQB|1|2Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.91776
836WOO|1|2CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.91780
845JUU|1|ASaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY41781
856SV4|1|2The cryo-EM structure of SDD1-stalled collided trisome.ELECTRON MICROSCOPY3.31758
866T83|1|aStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY41758
876S47|1|BASaccharomyces cerevisiae 80S ribosome bound with ABCF protein New1ELECTRON MICROSCOPY3.281707
886Z6J|1|C2Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native conditionELECTRON MICROSCOPY3.41700
896Z6K|1|C2Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomesELECTRON MICROSCOPY3.41700
905M1J|1|22Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.31781
916TNU|1|2Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.ELECTRON MICROSCOPY3.11771
927B7D|1|2Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAsELECTRON MICROSCOPY3.31771
936TB3|1|2yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.81771
946SNT|1|2Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.81771
956T4Q|1|C2Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.61771
966T7I|1|C2Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.ELECTRON MICROSCOPY3.21771
976T7T|1|C2Structure of yeast 80S ribosome stalled on poly(A) tract.ELECTRON MICROSCOPY3.11771
986T83|1|2bStructure of yeast disome (di-ribosome) stalled on poly(A) tract.ELECTRON MICROSCOPY41771
996Q8Y|1|2Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complexELECTRON MICROSCOPY3.11767
1005MC6|1|2Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.81767
1015LL6|1|2Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiationELECTRON MICROSCOPY3.91325
1026RBE|1|2State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.81750
1036FAI|1|2Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunitELECTRON MICROSCOPY3.41775
1046RBD|1|2State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particlesELECTRON MICROSCOPY3.471777
1056Y7C|1|2Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)ELECTRON MICROSCOPY3.81731
1066EML|1|2Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiaeELECTRON MICROSCOPY3.61675
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