NR_4.0_03510.4

Members (46)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4V88\|1\|A6 (rep)	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
2	4U4R\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
3	4U50\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
4	4U4Q\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
5	4U3U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
6	4U52\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
7	4U4U\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
8	4V88\|1\|A2	Small subunit ribosomal RNA	18S RIBOSOMAL RNA	Saccharomyces cerevisiae	Eukarya	RF01960	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
9	4U4R\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
10	5FCJ\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	2016-05-11
11	5I4L\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
12	4U3U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
13	5DC3\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
14	5FCI\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	2016-05-11
15	4U3N\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
16	4U4N\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
17	4U55\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
18	4U6F\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
19	4U4Y\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
20	4U53\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
21	4U4Q\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
22	4U4U\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
23	4U4Z\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
24	4U4N\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
25	4U52\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
26	4U3M\|1\|6	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
27	4U51\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
28	4U3M\|1\|2	Small subunit ribosomal RNA	18S rRNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
29	4U55\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
30	4U51\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
31	4U4Z\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
32	5I4L\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
33	4U3N\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
34	4U50\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
35	4U56\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
36	4U4Y\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
37	4U53\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
38	4U6F\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
39	5DC3\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
40	5FCJ\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	2016-05-11
41	5FCI\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	2016-05-11
42	4U56\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
43	4U4O\|1\|6	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
44	4U4O\|1\|2	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
45	4V7R\|1\|C1	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
46	4V7R\|1\|A1	Small subunit ribosomal RNA	18S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF01960	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09

Release history

Release	2.81	2.82	2.83	2.84	2.85	2.86	2.87	2.88	2.89	2.90
Date	2016-06-24	2016-07-01	2016-07-08	2016-07-15	2016-07-22	2016-07-29	2016-08-05	2016-08-12	2016-08-19	2016-08-26

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_03510.4	NR_all_03510.3	2.81	(44) 4U3M\|1\|2, 4U3M\|1\|6, 4U3N\|1\|2, 4U3N\|1\|6, 4U3U\|1\|2, 4U3U\|1\|6, 4U4N\|1\|2, 4U4N\|1\|6, 4U4O\|1\|2, 4U4O\|1\|6, 4U4Q\|1\|2, 4U4Q\|1\|6, 4U4R\|1\|2, 4U4R\|1\|6, 4U4U\|1\|2, 4U4U\|1\|6, 4U4Y\|1\|2, 4U4Y\|1\|6, 4U4Z\|1\|2, 4U4Z\|1\|6, 4U50\|1\|2, 4U50\|1\|6, 4U51\|1\|2, 4U51\|1\|6, 4U52\|1\|2, 4U52\|1\|6, 4U53\|1\|2, 4U53\|1\|6, 4U55\|1\|2, 4U55\|1\|6, 4U56\|1\|2, 4U56\|1\|6, 4U6F\|1\|2, 4U6F\|1\|6, 4V7R\|1\|A1, 4V7R\|1\|C1, 4V88\|1\|A2, 4V88\|1\|A6, 5DC3\|1\|2, 5DC3\|1\|6, 5FCI\|1\|2, 5FCI\|1\|6, 5FCJ\|1\|2, 5FCJ\|1\|6	(2) 5I4L\|1\|2, 5I4L\|1\|6	(7) 3J6X\|1\|1S, 3J6Y\|1\|1S, 3J77\|1\|1S, 3J78\|1\|1S, 4V6I\|1\|CA, 4V8Y\|1\|B2, 4V8Z\|1\|B2

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	4U4O\|1\|2	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	1750
2	4U56\|1\|2	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	1750
3	4U4Z\|1\|2	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1750
4	4U3N\|1\|2	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
5	4U6F\|1\|2	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
6	4U3M\|1\|2	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
7	4U3U\|1\|2	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1750
8	4U4R\|1\|2	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1750
9	4V88\|1\|A2	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1768
10	5I4L\|1\|2	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1781
11	4U4N\|1\|2	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1750
12	4U4U\|1\|2	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
13	4U4Q\|1\|2	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
14	4U55\|1\|2	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
15	4U51\|1\|2	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
16	4U53\|1\|2	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1750
17	4U50\|1\|2	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
18	4U52\|1\|2	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1750
19	5FCJ\|1\|2	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	1782
20	5FCI\|1\|2	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	1782
21	5DC3\|1\|2	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	1782
22	4U4Y\|1\|2	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1750
23	4V7R\|1\|A1	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	1789
24	4V7R\|1\|C1	Yeast 80S ribosome.	X-RAY DIFFRACTION	4	1789
25	4V88\|1\|A6	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	1770
26	4U6F\|1\|6	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
27	4U3U\|1\|6	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	1795
28	4U4R\|1\|6	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	1795
29	4U3M\|1\|6	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
30	4U4Y\|1\|6	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
31	4U3N\|1\|6	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
32	4U4Z\|1\|6	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
33	5I4L\|1\|6	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
34	4U4N\|1\|6	Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	1795
35	4U4U\|1\|6	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
36	4U4Q\|1\|6	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
37	4U50\|1\|6	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
38	4U53\|1\|6	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	1795
39	4U55\|1\|6	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
40	4U51\|1\|6	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	1795
41	5FCI\|1\|6	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	1796
42	5FCJ\|1\|6	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	1796
43	4U52\|1\|6	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	1795
44	4U56\|1\|6	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	1795
45	5DC3\|1\|6	Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	1796
46	4U4O\|1\|6	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	1791

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_03510.4 Obsolete

Release history

Parents

Children