BGSU RNA Site //

Equivalence class NR_4.0_06650.11 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
16R6P|1|5+ 6R6P|1|8 (rep)28S ribosomal RNA, 5.8S ribosomal RNA??Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
26R5Q|1|5+ 6R5Q|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
36P5I|1|5+ 6P5I|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.12019-09-18
46P5J|1|5+ 6P5J|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.12019-09-18
56P5K|1|5+ 6P5K|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.12019-09-18
66P5N|1|5+ 6P5N|1|828S rRNA, 5.8S rRNA??Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.22019-09-25
76D9J|1|5+ 6D9J|1|828S rRNA, 5.8S rRNA??Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
81VWW|1|5+ 1VWW|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
91VWY|1|5+ 1VWY|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
103J71|1|5+ 3J71|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.42014-06-18
113J72|1|5+ 3J72|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.42014-06-18
125LZS|1|5+ 5LZS|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
131VX3|1|5+ 1VX3|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.52014-06-18
143J74|1|5+ 3J74|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.52014-06-18
155LZV|1|5+ 5LZV|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
166MTD|1|5+ 6MTD|1|828S rRNA, 5.8S rRNA??Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
176D90|1|5+ 6D90|1|828S rRNA, 5.8S rRNA??Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
186MTE|1|5+ 6MTE|1|828S rRNA, 5.8S rRNA??Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
196MTC|1|5+ 6MTC|1|828S rRNA, 5.8S rRNA??Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
206GZ5|1|A2+ 6GZ5|1|A328S ribosomal RNA, 5.8S ribosomal RNA??tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
215LZZ|1|5+ 5LZZ|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
226GZ3|1|A2+ 6GZ3|1|A328S ribosomal RNA, 5.8S ribosomal RNA??tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.62018-12-05
235LZW|1|5+ 5LZW|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.532016-11-30
245LZX|1|5+ 5LZX|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.672016-11-30
256GZ4|1|A2+ 6GZ4|1|A328S ribosomal RNA, 5.8S ribosomal RNA??tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.62018-12-05
265LZT|1|5+ 5LZT|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.652016-11-30
271VX0|1|5+ 1VX0|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.92014-06-18
283J73|1|5+ 3J73|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.92014-06-18
296MTB|1|5+ 6MTB|1|828S rRNA, 5.8S rRNA??Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.62018-11-21
306HCJ|1|51+ 6HCJ|1|8128S ribosomal RNA, 5.8S ribosomal RNA??Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.82018-10-17
316R6G|1|5+ 6R6G|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.72019-07-10
325LZU|1|5+ 5LZU|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.752016-11-30
336FRK|1|5+ 6FRK|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.72018-03-28
346HCF|1|52+ 6HCF|1|8228S ribosomal RNA, 5.8S ribosomal RNA??Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.92018-10-17
353JAH|1|5+ 3JAH|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12
366R7Q|1|5+ 6R7Q|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.92019-07-10
375LZY|1|5+ 5LZY|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.992016-11-30
383JAG|1|5+ 3JAG|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.652015-08-12
393JAI|1|5+ 3JAI|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.652015-08-12
403J92|1|5+ 3J92|1|828S rRNA, 5.8S rRNA??Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.62015-01-21
413JAN|1|5+ 3JAN|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
423JAJ|1|5+ 3JAJ|1|828S ribosomal RNA, 5.8S ribosomal RNA??Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05

Release history

Release3.933.943.953.963.973.983.993.1003.101
Date2019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_06650.11NR_4.0_06650.103.93(41) 6R6G|1|5+6R6G|1|8, 3J73|1|5+3J73|1|8, 6R5Q|1|5+6R5Q|1|8, 3J72|1|5+3J72|1|8, 6P5K|1|5+6P5K|1|8, 3J71|1|5+3J71|1|8, 6P5J|1|5+6P5J|1|8, 1VX3|1|5+1VX3|1|8, 6P5I|1|5+6P5I|1|8, 1VX0|1|5+1VX0|1|8, 6MTE|1|5+6MTE|1|8, 1VWY|1|5+1VWY|1|8, 6MTD|1|5+6MTD|1|8, 1VWW|1|5+1VWW|1|8, 6MTC|1|5+6MTC|1|8, 6MTB|1|5+6MTB|1|8, 6HCJ|1|51+6HCJ|1|81, 6HCF|1|52+6HCF|1|82, 6GZ5|1|A2+6GZ5|1|A3, 6GZ4|1|A2+6GZ4|1|A3, 6GZ3|1|A2+6GZ3|1|A3, 6FRK|1|5+6FRK|1|8, 6D9J|1|5+6D9J|1|8, 6D90|1|5+6D90|1|8, 5LZZ|1|5+5LZZ|1|8, 5LZY|1|5+5LZY|1|8, 5LZX|1|5+5LZX|1|8, 5LZW|1|5+5LZW|1|8, 5LZV|1|5+5LZV|1|8, 5LZU|1|5+5LZU|1|8, 5LZT|1|5+5LZT|1|8, 5LZS|1|5+5LZS|1|8, 3JAN|1|5+3JAN|1|8, 3JAJ|1|5+3JAJ|1|8, 3JAI|1|5+3JAI|1|8, 3JAH|1|5+3JAH|1|8, 3JAG|1|5+3JAG|1|8, 6R7Q|1|5+6R7Q|1|8, 3J92|1|5+3J92|1|8, 6R6P|1|5+6R6P|1|8, 3J74|1|5+3J74|1|8(1) 6P5N|1|5+6P5N|1|8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_06650.11NR_4.0_06650.123.102(42) 3J71|1|5+3J71|1|8, 5LZY|1|5+5LZY|1|8, 6P5K|1|5+6P5K|1|8, 1VX3|1|5+1VX3|1|8, 5LZX|1|5+5LZX|1|8, 6P5J|1|5+6P5J|1|8, 1VX0|1|5+1VX0|1|8, 5LZW|1|5+5LZW|1|8, 6P5I|1|5+6P5I|1|8, 1VWY|1|5+1VWY|1|8, 5LZV|1|5+5LZV|1|8, 6MTE|1|5+6MTE|1|8, 1VWW|1|5+1VWW|1|8, 5LZU|1|5+5LZU|1|8, 6MTD|1|5+6MTD|1|8, 5LZT|1|5+5LZT|1|8, 6MTC|1|5+6MTC|1|8, 5LZS|1|5+5LZS|1|8, 6MTB|1|5+6MTB|1|8, 3JAN|1|5+3JAN|1|8, 6HCJ|1|51+6HCJ|1|81, 3JAJ|1|5+3JAJ|1|8, 6HCF|1|52+6HCF|1|82, 3JAI|1|5+3JAI|1|8, 6GZ5|1|A2+6GZ5|1|A3, 3JAH|1|5+3JAH|1|8, 6GZ4|1|A2+6GZ4|1|A3, 3JAG|1|5+3JAG|1|8, 6GZ3|1|A2+6GZ3|1|A3, 6R7Q|1|5+6R7Q|1|8, 3J92|1|5+3J92|1|8, 6FRK|1|5+6FRK|1|8, 6R6P|1|5+6R6P|1|8, 3J74|1|5+3J74|1|8, 6D9J|1|5+6D9J|1|8, 6R6G|1|5+6R6G|1|8, 3J73|1|5+3J73|1|8, 6D90|1|5+6D90|1|8, 6R5Q|1|5+6R5Q|1|8, 3J72|1|5+3J72|1|8, 5LZZ|1|5+5LZZ|1|8, 6P5N|1|5+6P5N|1|8(0) (1) 6T59|1|54+6T59|1|84

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16HCJ|1|51+6HCJ|1|81Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.83635
25LZY|1|5+5LZY|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.993543
35LZZ|1|5+5LZZ|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473543
45LZX|1|5+5LZX|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.673543
55LZW|1|5+5LZW|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.533543
65LZT|1|5+5LZT|1|8Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.653543
76P5K|1|5+6P5K|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.13594
86P5I|1|5+6P5I|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.13594
96P5J|1|5+6P5J|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.13594
105LZS|1|5+5LZS|1|8Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313543
115LZU|1|5+5LZU|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.753543
125LZV|1|5+5LZV|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353543
136R7Q|1|5+6R7Q|1|8Structure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.93543
146R5Q|1|5+6R5Q|1|8Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY33543
156R6G|1|5+6R6G|1|8Structure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.73543
166MTE|1|5+6MTE|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.43497
176MTD|1|5+6MTD|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.33497
186MTB|1|5+6MTB|1|8Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.63497
196MTC|1|5+6MTC|1|8Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.43497
206P5N|1|5+6P5N|1|8Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.23594
216HCF|1|52+6HCF|1|82Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.93634
226D90|1|5+6D90|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.23594
236D9J|1|5+6D9J|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.23594
241VWY|1|5+1VWY|1|8Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
253J71|1|5+3J71|1|8Structure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.43662
261VWW|1|5+1VWW|1|8Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
271VX3|1|5+1VX3|1|8Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.53662
283J74|1|5+3J74|1|8Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.53662
293J72|1|5+3J72|1|8Structure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.43662
301VX0|1|5+1VX0|1|8Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.93720
313J73|1|5+3J73|1|8Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.93720
323J92|1|5+3J92|1|8Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63662
336FRK|1|5+6FRK|1|8Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.73658
343JAJ|1|5+3JAJ|1|8Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
353JAN|1|5+3JAN|1|8Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
363JAG|1|5+3JAG|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.653662
373JAH|1|5+3JAH|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453662
383JAI|1|5+3JAI|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.653662
396R6P|1|5+6R6P|1|8Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.13662
406GZ4|1|A2+6GZ4|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.63612
416GZ3|1|A2+6GZ3|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.63612
426GZ5|1|A2+6GZ5|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.53612