BGSU RNA Site

Equivalence class NR_4.0_06650.13 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
16SGC|1|54+ 6SGC|1|84 (rep)28S ribosomal RNA, 5.8S ribosomal RNARabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
26R6P|1|5+ 6R6P|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.12019-07-10
36R5Q|1|5+ 6R5Q|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10
46P5I|1|5+ 6P5I|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.12019-09-18
56P5J|1|5+ 6P5J|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.12019-09-18
66P5K|1|5+ 6P5K|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.12019-09-18
76P5N|1|5+ 6P5N|1|828S rRNA, 5.8S rRNAStructure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.22019-09-25
86D9J|1|5+ 6D9J|1|828S rRNA, 5.8S rRNAMammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
91VWW|1|5+ 1VWW|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
101VWY|1|5+ 1VWY|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.42014-06-18
113J71|1|5+ 3J71|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.42014-06-18
123J72|1|5+ 3J72|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.42014-06-18
136T59|1|54+ 6T59|1|8428S ribosomal RNA, 5.8S ribosomal RNAStructure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.112019-11-27
145LZS|1|5+ 5LZS|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
151VX3|1|5+ 1VX3|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.52014-06-18
163J74|1|5+ 3J74|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.52014-06-18
175LZV|1|5+ 5LZV|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
186MTD|1|5+ 6MTD|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.32018-11-21
196D90|1|5+ 6D90|1|828S rRNA, 5.8S rRNAMammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.22018-06-06
206MTE|1|5+ 6MTE|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.42018-11-21
216MTC|1|5+ 6MTC|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.42018-11-21
226GZ5|1|A2+ 6GZ5|1|A328S ribosomal RNA, 5.8S ribosomal RNAtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
235LZZ|1|5+ 5LZZ|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
246GZ3|1|A2+ 6GZ3|1|A328S ribosomal RNA, 5.8S ribosomal RNAtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.62018-12-05
255LZW|1|5+ 5LZW|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.532016-11-30
265LZX|1|5+ 5LZX|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.672016-11-30
276GZ4|1|A2+ 6GZ4|1|A328S ribosomal RNA, 5.8S ribosomal RNAtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.62018-12-05
285LZT|1|5+ 5LZT|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.652016-11-30
291VX0|1|5+ 1VX0|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.92014-06-18
303J73|1|5+ 3J73|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.92014-06-18
316MTB|1|5+ 6MTB|1|828S rRNA, 5.8S rRNARabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.62018-11-21
326HCJ|1|51+ 6HCJ|1|8128S ribosomal RNA, 5.8S ribosomal RNAStructure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.82018-10-17
336R6G|1|5+ 6R6G|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.72019-07-10
345LZU|1|5+ 5LZU|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.752016-11-30
356FRK|1|5+ 6FRK|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.72018-03-28
366HCF|1|52+ 6HCF|1|8228S ribosomal RNA, 5.8S ribosomal RNAStructure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.92018-10-17
373JAH|1|5+ 3JAH|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12
386R7Q|1|5+ 6R7Q|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.92019-07-10
395LZY|1|5+ 5LZY|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.992016-11-30
403JAG|1|5+ 3JAG|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.652015-08-12
413JAI|1|5+ 3JAI|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.652015-08-12
423J92|1|5+ 3J92|1|828S rRNA, 5.8S rRNAStructure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.62015-01-21
433JAN|1|5+ 3JAN|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
443JAJ|1|5+ 3JAJ|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05

Release history

Release3.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.150
Date2019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_06650.13NR_4.0_06650.123.103(43) 6HCF|1|52+6HCF|1|82, 6GZ5|1|A2+6GZ5|1|A3, 6GZ4|1|A2+6GZ4|1|A3, 6GZ3|1|A2+6GZ3|1|A3, 6FRK|1|5+6FRK|1|8, 6D9J|1|5+6D9J|1|8, 6D90|1|5+6D90|1|8, 5LZZ|1|5+5LZZ|1|8, 5LZY|1|5+5LZY|1|8, 5LZX|1|5+5LZX|1|8, 5LZW|1|5+5LZW|1|8, 5LZV|1|5+5LZV|1|8, 5LZU|1|5+5LZU|1|8, 5LZT|1|5+5LZT|1|8, 5LZS|1|5+5LZS|1|8, 3JAN|1|5+3JAN|1|8, 3JAJ|1|5+3JAJ|1|8, 3JAI|1|5+3JAI|1|8, 3JAH|1|5+3JAH|1|8, 6T59|1|54+6T59|1|84, 3JAG|1|5+3JAG|1|8, 6R7Q|1|5+6R7Q|1|8, 3J92|1|5+3J92|1|8, 6R6P|1|5+6R6P|1|8, 3J74|1|5+3J74|1|8, 6R6G|1|5+6R6G|1|8, 3J73|1|5+3J73|1|8, 6R5Q|1|5+6R5Q|1|8, 3J72|1|5+3J72|1|8, 6P5N|1|5+6P5N|1|8, 3J71|1|5+3J71|1|8, 6P5K|1|5+6P5K|1|8, 1VX3|1|5+1VX3|1|8, 6P5J|1|5+6P5J|1|8, 1VX0|1|5+1VX0|1|8, 6P5I|1|5+6P5I|1|8, 1VWY|1|5+1VWY|1|8, 6MTE|1|5+6MTE|1|8, 1VWW|1|5+1VWW|1|8, 6MTD|1|5+6MTD|1|8, 6MTC|1|5+6MTC|1|8, 6MTB|1|5+6MTB|1|8, 6HCJ|1|51+6HCJ|1|81(1) 6SGC|1|54+6SGC|1|84(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_06650.13NR_4.0_06650.143.151(36) 3JAI|1|5+3JAI|1|8, 6P5J|1|5+6P5J|1|8, 6GZ3|1|A2+6GZ3|1|A3, 3JAN|1|5+3JAN|1|8, 6P5N|1|5+6P5N|1|8, 6GZ5|1|A2+6GZ5|1|A3, 5LZT|1|5+5LZT|1|8, 6R6G|1|5+6R6G|1|8, 6HCJ|1|51+6HCJ|1|81, 5LZV|1|5+5LZV|1|8, 6R7Q|1|5+6R7Q|1|8, 6MTC|1|5+6MTC|1|8, 5LZX|1|5+5LZX|1|8, 6T59|1|54+6T59|1|84, 5LZZ|1|5+5LZZ|1|8, 3JAG|1|5+3JAG|1|8, 6MTE|1|5+6MTE|1|8, 6D9J|1|5+6D9J|1|8, 6P5I|1|5+6P5I|1|8, 6FRK|1|5+6FRK|1|8, 3JAJ|1|5+3JAJ|1|8, 6P5K|1|5+6P5K|1|8, 6GZ4|1|A2+6GZ4|1|A3, 5LZS|1|5+5LZS|1|8, 6R5Q|1|5+6R5Q|1|8, 6HCF|1|52+6HCF|1|82, 5LZU|1|5+5LZU|1|8, 6R6P|1|5+6R6P|1|8, 6MTB|1|5+6MTB|1|8, 5LZW|1|5+5LZW|1|8, 6SGC|1|54+6SGC|1|84, 5LZY|1|5+5LZY|1|8, 3J92|1|5+3J92|1|8, 6MTD|1|5+6MTD|1|8, 6D90|1|5+6D90|1|8, 3JAH|1|5+3JAH|1|8(8) 1VWY|1|5+1VWY|1|8, 3J71|1|5+3J71|1|8, 3J72|1|5+3J72|1|8, 1VX0|1|5+1VX0|1|8, 1VX3|1|5+1VX3|1|8, 3J73|1|5+3J73|1|8, 3J74|1|5+3J74|1|8, 1VWW|1|5+1VWW|1|8(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16D9J|1|5+6D9J|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.23594
26D90|1|5+6D90|1|8Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.23594
36HCF|1|52+6HCF|1|82Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.93634
46P5N|1|5+6P5N|1|8Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.23594
56P5J|1|5+6P5J|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.13594
66P5I|1|5+6P5I|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.13594
76P5K|1|5+6P5K|1|8Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.13594
86T59|1|54+6T59|1|84Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.113543
95LZS|1|5+5LZS|1|8Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313543
105LZU|1|5+5LZU|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.753543
115LZV|1|5+5LZV|1|8Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353543
126R7Q|1|5+6R7Q|1|8Structure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.93543
136R5Q|1|5+6R5Q|1|8Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY33543
146R6G|1|5+6R6G|1|8Structure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.73543
156MTE|1|5+6MTE|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.43497
166MTD|1|5+6MTD|1|8Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.33497
176MTC|1|5+6MTC|1|8Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.43497
186MTB|1|5+6MTB|1|8Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.63497
196SGC|1|54+6SGC|1|84Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.83603
205LZY|1|5+5LZY|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.993543
215LZZ|1|5+5LZZ|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473543
225LZX|1|5+5LZX|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.673543
235LZW|1|5+5LZW|1|8Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.533543
245LZT|1|5+5LZT|1|8Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.653543
256HCJ|1|51+6HCJ|1|81Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.83635
266GZ3|1|A2+6GZ3|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.63612
276GZ4|1|A2+6GZ4|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.63612
286GZ5|1|A2+6GZ5|1|A3tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.53612
296R6P|1|5+6R6P|1|8Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.13662
303JAI|1|5+3JAI|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.653662
313JAH|1|5+3JAH|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453662
323JAG|1|5+3JAG|1|8Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.653662
336FRK|1|5+6FRK|1|8Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.73658
343JAN|1|5+3JAN|1|8Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
353JAJ|1|5+3JAJ|1|8Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
363J92|1|5+3J92|1|8Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63662
371VX3|1|5+1VX3|1|8Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.53662
383J74|1|5+3J74|1|8Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.53662
393J71|1|5+3J71|1|8Structure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.43662
401VWW|1|5+1VWW|1|8Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
411VWY|1|5+1VWY|1|8Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
423J72|1|5+3J72|1|8Structure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.43662
433J73|1|5+3J73|1|8Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.93720
441VX0|1|5+1VX0|1|8Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.93720