#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O7Y|1|B7 (rep)5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.22021-06-02
27OYD|1|K5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bElectron microscopy2.32022-07-20
37O7Z|1|B75S ribosomal RNA5SOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.42021-06-02
47UCK|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S translation initiation complex with ac4c(-1) mRNA and HarringtonineElectron microscopy2.82022-06-01
57OBR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001RNC-SRP early complexElectron microscopy2.82021-07-21
67QWQ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Ternary complex of ribosome nascent chain with SRP and NACElectron microscopy2.832022-03-16
77ZJW|1|L75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome as it decodes the Sec-UGA codonElectron microscopy2.82022-10-19
86SGC|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.82019-12-04
97QWR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACElectron microscopy2.92022-03-09
107O80|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.92021-06-02
117TOR|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.92022-05-25
126R5Q|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy32019-07-10
137UCJ|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S translation initiation complex with mRNA and HarringtonineElectron microscopy3.12022-06-01
146R6P|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (rotated state)Electron microscopy3.12019-07-10
157NWI|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SElectron microscopy3.132021-07-07
167ZJX|1|L75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome programmed with SECIS and SBP2Electron microscopy3.12022-09-07
176P5K|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)Electron microscopy3.12019-09-18
187O81|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotElectron microscopy3.12021-06-02
197TOQ|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRElectron microscopy3.12022-05-25
206P5J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)Electron microscopy3.12019-09-18
216P5I|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)Electron microscopy3.12019-09-18
226T59|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexElectron microscopy3.112019-11-27
237NFX|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AElectron microscopy3.22021-06-02
246P5N|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1Electron microscopy3.22019-09-25
257MDZ|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S rabbit ribosome stalled with benzamide-CHXElectron microscopy3.22021-09-01
267TM3|1|u5S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.252022-10-19
276D9J|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
285LZS|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
295LZV|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
306MTD|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)Electron microscopy3.32018-11-21
317QWS|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of ribosome translating beta-tubulin in complex with TTC5 and NACElectron microscopy3.42022-03-09
326ZVK|1|d25S ribosomal RNA5S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF00001The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.492020-12-23
336MTE|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)Electron microscopy3.42018-11-21
345LZZ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
356MTC|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)Electron microscopy3.42018-11-21
365LZW|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
376D90|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
387A01|1|d25S ribosomal RNA5S RIBOSOMAL RNAOryctolagus cuniculusEukaryaRF00001The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismElectron microscopy3.62020-12-30
395LZT|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
405LZX|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
416GZ5|1|A45S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)Electron microscopy3.52018-12-05
426MTB|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)Electron microscopy3.62018-11-21
436GZ3|1|A45S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)Electron microscopy3.62018-12-05
446FRK|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.72018-03-28
455LZU|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
466R6G|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex with SRP.Electron microscopy3.72019-07-10
477NWG|1|715S ribosomal RNA5S Ribosomal RNAOryctolagus cuniculusEukaryaRF00001Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.Electron microscopy3.82021-07-07
486GZ4|1|A45S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)Electron microscopy3.62018-12-05
496HCJ|1|715S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.82018-10-17
503JAH|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
517TUT|1|u5S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass transloconElectron microscopy3.882022-10-19
526R7Q|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex with Sec61.Electron microscopy3.92019-07-10
533J92|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure and assembly pathway of the ribosome quality control complexElectron microscopy3.62015-01-21
545LZY|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.992016-11-30
553JAG|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
563JAI|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
576HCF|1|725S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
583JAN|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
593JAJ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release3.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.270
Date2022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-15

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16ZVK|1|d2The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.49120
27A01|1|d2The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanismELECTRON MICROSCOPY3.6120
36GZ4|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)ELECTRON MICROSCOPY3.6119
46GZ5|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.5119
56GZ3|1|A4tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.6119
67QWS|1|7Structure of ribosome translating beta-tubulin in complex with TTC5 and NACELECTRON MICROSCOPY3.4120
77QWR|1|7Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACELECTRON MICROSCOPY2.9120
87QWQ|1|7Ternary complex of ribosome nascent chain with SRP and NACELECTRON MICROSCOPY2.83120
97NFX|1|7Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state AELECTRON MICROSCOPY3.2120
107OBR|1|7RNC-SRP early complexELECTRON MICROSCOPY2.8120
117TOR|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.9120
127TOQ|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein poly-PRELECTRON MICROSCOPY3.1120
136R6G|1|7Structure of XBP1u-paused ribosome nascent chain complex with SRP.ELECTRON MICROSCOPY3.7120
146R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
156R6P|1|7Structure of XBP1u-paused ribosome nascent chain complex (rotated state)ELECTRON MICROSCOPY3.1120
167MDZ|1|780S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.2119
176MTC|1|7Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)ELECTRON MICROSCOPY3.4120
186MTB|1|7Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)ELECTRON MICROSCOPY3.6120
196MTD|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)ELECTRON MICROSCOPY3.3120
206MTE|1|7Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)ELECTRON MICROSCOPY3.4120
217TM3|1|uStructure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.25120
227TUT|1|uStructure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass transloconELECTRON MICROSCOPY3.88120
233J92|1|7Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.6120
243JAI|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.65120
253JAG|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.65120
263JAH|1|7Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.45120
275LZY|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.99120
285LZZ|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.47120
295LZX|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.67120
305LZW|1|7Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.53120
315LZT|1|7Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.65120
325LZV|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.35120
335LZU|1|7Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.75120
345LZS|1|7Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.31119
356R7Q|1|7Structure of XBP1u-paused ribosome nascent chain complex with Sec61.ELECTRON MICROSCOPY3.9120
366T59|1|74Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complexELECTRON MICROSCOPY3.11120
376FRK|1|7Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.7120
383JAJ|1|7Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.75120
393JAN|1|7Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.75120
406P5J|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)ELECTRON MICROSCOPY3.1119
416P5K|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)ELECTRON MICROSCOPY3.1119
426P5I|1|7Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)ELECTRON MICROSCOPY3.1119
437ZJX|1|L7Rabbit 80S ribosome programmed with SECIS and SBP2ELECTRON MICROSCOPY3.1119
447O81|1|B7Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknotELECTRON MICROSCOPY3.1119
457O80|1|B7Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.9119
467O7Y|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.2119
477O7Z|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.4119
486SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
497ZJW|1|L7Rabbit 80S ribosome as it decodes the Sec-UGA codonELECTRON MICROSCOPY2.8119
507OYD|1|KCryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bELECTRON MICROSCOPY2.3119
517UCJ|1|7Mammalian 80S translation initiation complex with mRNA and HarringtonineELECTRON MICROSCOPY3.1120
527UCK|1|780S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.8120
536P5N|1|7Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1ELECTRON MICROSCOPY3.2119
546D90|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.2119
557NWI|1|7Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin SELECTRON MICROSCOPY3.13120
566D9J|1|7Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.2119
576HCF|1|72Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.9120
587NWG|1|71Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.ELECTRON MICROSCOPY3.8120
596HCJ|1|71Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.8120
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