Equivalence class NR_4.0_11709.2 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3ZGZ|1|B (rep) | Transfer RNA | TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-ray diffraction | 2.4 | 2013-01-30 |
| 2 | 4AQ7|1|B | Transfer RNA | E. COLI TRNALEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.5 | 2012-06-13 |
| 3 | 5OMW|1|B | Transfer RNA | L-leucyl-tRNA | Escherichia coli | Bacteria | RF00005 | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.6 | 2017-11-15 |
| 4 | 8POT|1|B | Transfer RNA | tRNA(leu) | Escherichia coli K-12 | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole cmpd9 in the editing conformation | X-ray diffraction | 2.149 | 2024-06-12 |
| 5 | 3ZGZ|1|E | Transfer RNA | TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-ray diffraction | 2.4 | 2013-01-30 |
| 6 | 4AS1|1|B | Transfer RNA | TRNA-LEU5 (UAA ISOACEPTOR) | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-ray diffraction | 2.02 | 2012-06-13 |
| 7 | 4ARI|1|B | Transfer RNA | TRNA-LEU5 (UAA ISOACEPTOR) | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-ray diffraction | 2.08 | 2012-06-13 |
| 8 | 4AQ7|1|E | Transfer RNA | E. COLI TRNALEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.5 | 2012-06-13 |
| 9 | 4CQN|1|B | Transfer RNA | ESCHERICHIA COLI TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-ray diffraction | 2.5 | 2014-07-02 |
| 10 | 3ZJT|1|B | Transfer RNA | TRNALEU5 UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation | X-ray diffraction | 2.2 | 2013-04-17 |
| 11 | 5OMW|1|E | Transfer RNA | L-leucyl-tRNA | Escherichia coli | Bacteria | RF00005 | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-ray diffraction | 2.6 | 2017-11-15 |
| 12 | 5ON2|1|B | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 13 | 3ZJU|1|B | Transfer RNA | TRNALEU5 UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3016 in the editing conformation | X-ray diffraction | 2.4 | 2013-04-17 |
| 14 | 5ONH|1|B | Transfer RNA | L-leucyl-tRNA(Leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 15 | 5ON2|1|E | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 16 | 5ONH|1|E | Transfer RNA | L-leucyl-tRNA(Leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 17 | 4ARC|1|B | Transfer RNA | TRNA-LEU5 (UAA ISOACCEPTOR) | Escherichia coli | Bacteria | RF00005 | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucine in the editing conformation | X-ray diffraction | 2 | 2012-06-13 |
| 18 | 5ON3|1|B | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 19 | 4CQN|1|E | Transfer RNA | ESCHERICHIA COLI TRNA-LEU UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-ray diffraction | 2.5 | 2014-07-02 |
| 20 | 3ZJV|1|B | Transfer RNA | TRNALEU5 UAA ISOACCEPTOR | Escherichia coli | Bacteria | RF00005 | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation | X-ray diffraction | 2.31 | 2013-04-17 |
| 21 | 5ON3|1|E | Transfer RNA | tRNA(leu) | Escherichia coli | Bacteria | RF00005 | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-ray diffraction | 3.1 | 2017-11-15 |
| 22 | 2NQP|1|F | transfer RNA | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.5 | 2007-05-15 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4CQN|1|E | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-RAY DIFFRACTION | 2.5 | 79 |
| 2 | 5ON3|1|E | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 79 |
| 3 | 5ON2|1|E | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 81 |
| 4 | 5ONH|1|E | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 83 |
| 5 | 4AQ7|1|E | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.5 | 77 |
| 6 | 5OMW|1|E | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.6 | 77 |
| 7 | 3ZGZ|1|E | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-RAY DIFFRACTION | 2.4 | 80 |
| 8 | 3ZGZ|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation | X-RAY DIFFRACTION | 2.4 | 82 |
| 9 | 5ON3|1|B | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of leucine in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 79 |
| 10 | 5ONH|1|B | Quaternary complex of wild type E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 82 |
| 11 | 5ON2|1|B | Quaternary complex of mutant T252A of E. coli leucyl-tRNA synthetase with tRNA(leu), leucyl-adenylate analogue, and post-transfer editing analogue of norvaline in the aminoacylation conformation | X-RAY DIFFRACTION | 3.1 | 85 |
| 12 | 4AQ7|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.5 | 79 |
| 13 | 5OMW|1|B | Mutant T252A of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucyl-adenylate analogue in the aminoacylation conformation | X-RAY DIFFRACTION | 2.6 | 83 |
| 14 | 4CQN|1|B | Crystal structure of the E.coli LeuRS-tRNA complex with the non- cognate isoleucyl adenylate analogue | X-RAY DIFFRACTION | 2.5 | 82 |
| 15 | 2NQP|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.5 | 71 |
| 16 | 8POT|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole cmpd9 in the editing conformation | X-RAY DIFFRACTION | 2.149 | 84 |
| 17 | 3ZJV|1|B | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3213 in the editing conformation | X-RAY DIFFRACTION | 2.31 | 84 |
| 18 | 4AS1|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-RAY DIFFRACTION | 2.02 | 82 |
| 19 | 3ZJU|1|B | Ternary complex of E .coli leucyl-tRNA synthetase, tRNA(Leu) and the benzoxaborole AN3016 in the editing conformation | X-RAY DIFFRACTION | 2.4 | 79 |
| 20 | 4ARI|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole AN2679 in the editing conformation | X-RAY DIFFRACTION | 2.08 | 79 |
| 21 | 3ZJT|1|B | Ternary complex of E.coli leucyl-tRNA synthetase, tRNA(Leu)574 and the benzoxaborole AN3017 in the editing conformation | X-RAY DIFFRACTION | 2.2 | 82 |
| 22 | 4ARC|1|B | Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and leucine in the editing conformation | X-RAY DIFFRACTION | 2 | 71 |
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